Analysis of interatomic Contacts of Structural Units in PDB entry:
3K0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K0B entry

There is 1 chain in PDB entry 3K0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -10PRO 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3K0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 0Right-handed 310
Helix 2
2
A
14 25Right-handed alpha
Helix 3
3
A
41 52Right-handed alpha
Helix 4
4
A
69 79Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
105 125Right-handed alpha
Helix 7
7
A
175 186Right-handed alpha
Helix 8
8
A
202 213Right-handed alpha
Helix 9
9
A
223 228Right-handed 310
Helix 10
10
A
232 247Right-handed alpha
Helix 11
11
A
261 275Right-handed alpha
Helix 12
12
A
287 291Right-handed 310
Helix 13
13
A
309 329Right-handed alpha
Helix 14
14
A
343 349Right-handed alpha
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There are 2 sheets in PDB entry 3K0B. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
58 66anti-parallel
Strand 5
A
148 154anti-parallel
Strand 6
A
140 145anti-parallel
Strand 7
A
94 99parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
255 259parallel
Strand 3
A
194 196parallel
Strand 4
A
299 302parallel
Strand 5
A
334 339parallel
Strand 6
A
364 369anti-parallel
Strand 7
A
354 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il