Analysis of interatomic Contacts of Structural Units in PDB entry:
3K0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K0Y entry

There is 1 chain in PDB entry 3K0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34LYS 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 3K0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
117 119Right-handed 310
Helix 2
2
A
120 126Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3K0Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
143 152anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
98 112parallel
Strand 5
A
76 86anti-parallel
Strand 6
A
35 46anti-parallel
Strand 7
A
49 54anti-parallel
Strand 8
A
59 65anti-parallel
Strand 9
A
98 112parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
208 216parallel
Strand 4
A
219 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il