Analysis of interatomic Contacts of Structural Units in PDB entry:
3K17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K17 entry

There are 4 chains in PDB entry 3K17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7GLY 361
B
 ASN 7GLY 361
C
 ASN 7GLY 361
D
 ASN 7GLY 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 3K17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
74 76Right-handed 310
Helix 3
3
A
77 94Right-handed alpha
Helix 4
4
A
120 138Right-handed alpha
Helix 5
5
A
142 159Right-handed alpha
Helix 6
6
A
163 172Right-handed alpha
Helix 7
7
A
181 190Right-handed alpha
Helix 8
8
A
193 200Right-handed alpha
Helix 9
9
A
227 242Right-handed alpha
Helix 10
10
A
242 267Right-handed alpha
Helix 11
11
A
268 291Right-handed alpha
Helix 12
12
A
296 309Right-handed alpha
Helix 13
13
A
330 344Right-handed alpha
Helix 14
14
B
23 27Right-handed 310
Helix 15
15
B
74 76Right-handed 310
Helix 16
16
B
77 94Right-handed alpha
Helix 17
17
B
120 138Right-handed alpha
Helix 18
18
B
142 159Right-handed alpha
Helix 19
19
B
163 172Right-handed alpha
Helix 20
20
B
181 190Right-handed alpha
Helix 21
21
B
193 200Right-handed alpha
Helix 22
22
B
228 242Right-handed alpha
Helix 23
23
B
242 267Right-handed alpha
Helix 24
24
B
268 291Right-handed alpha
Helix 25
25
B
296 309Right-handed alpha
Helix 26
26
B
330 345Right-handed alpha
Helix 27
27
C
23 27Right-handed 310
Helix 28
28
C
74 76Right-handed 310
Helix 29
29
C
77 94Right-handed alpha
Helix 30
30
C
120 138Right-handed alpha
Helix 31
31
C
142 159Right-handed alpha
Helix 32
32
C
163 172Right-handed alpha
Helix 33
33
C
181 189Right-handed alpha
Helix 34
34
C
193 200Right-handed alpha
Helix 35
35
C
230 242Right-handed alpha
Helix 36
36
C
242 267Right-handed alpha
Helix 37
37
C
268 291Right-handed alpha
Helix 38
38
C
296 309Right-handed alpha
Helix 39
39
C
330 345Right-handed alpha
Helix 40
40
D
23 27Right-handed 310
Helix 41
41
D
77 94Right-handed alpha
Helix 42
42
D
120 138Right-handed alpha
Helix 43
43
D
142 159Right-handed alpha
Helix 44
44
D
163 172Right-handed alpha
Helix 45
45
D
181 189Right-handed alpha
Helix 46
46
D
193 200Right-handed alpha
Helix 47
47
D
227 240Right-handed alpha
Helix 48
48
D
242 267Right-handed alpha
Helix 49
49
D
268 289Right-handed alpha
Helix 50
50
D
296 309Right-handed alpha
Helix 51
51
D
330 344Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3K17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
101 107parallel
Strand 3
A
31 47anti-parallel
Strand 4
A
174 178anti-parallel
Strand 5
A
206 210anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
101 107parallel
Strand 3
A
31 47anti-parallel
Strand 4
A
9 20anti-parallel
Strand 5
A
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
216 221anti-parallel
Strand 4
A
347 348anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
101 107parallel
Strand 3
B
31 47anti-parallel
Strand 4
B
174 178anti-parallel
Strand 5
B
206 210anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
101 107parallel
Strand 3
B
31 47anti-parallel
Strand 4
B
9 20anti-parallel
Strand 5
B
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 220first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
312 315anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 54first strand
Strand 2
C
101 107parallel
Strand 3
C
31 47anti-parallel
Strand 4
C
174 178anti-parallel
Strand 5
C
206 210anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 54first strand
Strand 2
C
101 107parallel
Strand 3
C
31 47anti-parallel
Strand 4
C
9 20anti-parallel
Strand 5
C
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 315first strand
Strand 2
C
323 328anti-parallel
Strand 3
C
216 221anti-parallel
Strand 4
C
347 348anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 54first strand
Strand 2
D
101 107parallel
Strand 3
D
31 47anti-parallel
Strand 4
D
174 178anti-parallel
Strand 5
D
206 210anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 54first strand
Strand 2
D
101 107parallel
Strand 3
D
31 47anti-parallel
Strand 4
D
9 20anti-parallel
Strand 5
D
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
312 315first strand
Strand 2
D
324 328anti-parallel
Strand 3
D
216 221anti-parallel
Strand 4
D
347 348anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il