Analysis of interatomic Contacts of Structural Units in PDB entry:
3K5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K5D entry

There are 3 chains in PDB entry 3K5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 46ASN 385
B
 SER 46ASN 385
C
 SER 46ILE 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3K5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 3Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
135 144Right-handed alpha
Helix 5
5
A
180 184Right-handed 310
Helix 6
6
A
216 221Right-handed alpha
Helix 7
7
A
238 252Right-handed alpha
Helix 8
8
A
276 280Right-handed 310
Helix 9
9
A
301 305Right-handed alpha
Helix 10
10
A
334 340Right-handed alpha
Helix 11
11
A
347 349Right-handed 310
Helix 12
12
A
379 383Right-handed 310
Helix 13
13
B
46 2Right-handed 310
Helix 14
14
B
53 57Right-handed 310
Helix 15
15
B
123 127Right-handed 310
Helix 16
16
B
135 144Right-handed alpha
Helix 17
17
B
180 184Right-handed 310
Helix 18
18
B
216 221Right-handed alpha
Helix 19
19
B
238 252Right-handed alpha
Helix 20
20
B
276 280Right-handed 310
Helix 21
21
B
291 294Right-handed 310
Helix 22
22
B
301 305Right-handed alpha
Helix 23
23
B
334 340Right-handed alpha
Helix 24
24
B
347 349Right-handed 310
Helix 25
25
B
378 383Right-handed alpha
Helix 26
26
C
47 3Right-handed 310
Helix 27
27
C
53 57Right-handed 310
Helix 28
28
C
123 127Right-handed 310
Helix 29
29
C
135 144Right-handed alpha
Helix 30
30
C
180 184Right-handed 310
Helix 31
31
C
216 221Right-handed alpha
Helix 32
32
C
238 252Right-handed alpha
Helix 33
33
C
276 280Right-handed 310
Helix 34
34
C
301 305Right-handed alpha
Helix 35
35
C
334 339Right-handed alpha
Helix 36
36
C
347 349Right-handed 310
Helix 37
37
C
379 383Right-handed 310
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There are no sheets in PDB entry 3K5D
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