Analysis of interatomic Contacts of Structural Units in PDB entry:
3K5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K5P entry

There is 1 chain in PDB entry 3K5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8TYR 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3K5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
21 31Right-handed alpha
Helix 3
3
A
44 53Right-handed alpha
Helix 4
4
A
67 74Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
109 126Right-handed alpha
Helix 7
7
A
127 137Right-handed alpha
Helix 8
8
A
161 174Right-handed alpha
Helix 9
9
A
197 205Right-handed alpha
Helix 10
10
A
223 230Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
298 320Right-handed alpha
Helix 13
13
A
351 363Right-handed alpha
Helix 14
14
A
388 401Right-handed alpha
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There are 3 sheets in PDB entry 3K5P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
14 16parallel
Strand 3
A
57 60parallel
Strand 4
A
79 82parallel
Strand 5
A
102 103parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
177 181parallel
Strand 3
A
154 158parallel
Strand 4
A
207 210parallel
Strand 5
A
234 238parallel
Strand 6
A
259 264parallel
Strand 7
A
288 290parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 374first strand
Strand 2
A
379 385anti-parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
405 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il