Analysis of interatomic Contacts of Structural Units in PDB entry:
3K5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K5Q entry

There are 2 chains in PDB entry 3K5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 168SER 567
B
 U 1 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3K5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 173Right-handed 310
Helix 2
2
A
184 192Right-handed alpha
Helix 3
3
A
193 199Right-handed alpha
Helix 4
4
A
200 211Right-handed alpha
Helix 5
5
A
216 229Right-handed alpha
Helix 6
6
A
230 239Right-handed alpha
Helix 7
7
A
242 257Right-handed alpha
Helix 8
8
A
261 276Right-handed alpha
Helix 9
9
A
276 283Right-handed alpha
Helix 10
10
A
285 297Right-handed alpha
Helix 11
11
A
298 308Right-handed alpha
Helix 12
12
A
312 321Right-handed alpha
Helix 13
13
A
324 335Right-handed alpha
Helix 14
14
A
336 349Right-handed alpha
Helix 15
15
A
349 358Right-handed alpha
Helix 16
16
A
359 373Right-handed alpha
Helix 17
17
A
376 380Right-handed 310
Helix 18
18
A
383 404Right-handed alpha
Helix 19
19
A
404 411Right-handed alpha
Helix 20
20
A
414 424Right-handed alpha
Helix 21
21
A
427 438Right-handed alpha
Helix 22
22
A
442 448Right-handed alpha
Helix 23
23
A
451 463Right-handed alpha
Helix 24
24
A
464 477Right-handed alpha
Helix 25
25
A
488 495Right-handed alpha
Helix 26
26
A
498 515Right-handed alpha
Helix 27
27
A
527 550Right-handed alpha
Helix 28
28
A
552 566Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3K5Q.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
525 526anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il