Analysis of interatomic Contacts of Structural Units in PDB entry:
3K5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K5W entry

There is 1 chain in PDB entry 3K5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLU 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3K5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
22 40Right-handed alpha
Helix 3
3
A
55 69Right-handed alpha
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
136 141Right-handed alpha
Helix 6
6
A
181 186Right-handed 310
Helix 7
7
A
187 192Right-handed alpha
Helix 8
8
A
202 207Right-handed alpha
Helix 9
9
A
216 220Right-handed 310
Helix 10
10
A
231 235Right-handed 310
Helix 11
11
A
245 259Right-handed alpha
Helix 12
12
A
307 315Right-handed alpha
Helix 13
13
A
322 331Right-handed 310
Helix 14
14
A
342 350Right-handed alpha
Helix 15
15
A
361 365Right-handed 310
Helix 16
16
A
366 367Right-handed 310
Helix 17
17
A
370 377Right-handed alpha
Helix 18
18
A
404 408Right-handed 310
Helix 19
19
A
411 426Right-handed alpha
Helix 20
20
A
429 444Right-handed alpha
Helix 21
21
A
445 448Right-handed 310
Helix 22
22
A
455 465Right-handed alpha
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There are 2 sheets in PDB entry 3K5W. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
2 5parallel
Strand 3
A
212 214anti-parallel
Strand 4
A
396 400parallel
Strand 5
A
389 393anti-parallel
Strand 6
A
380 384anti-parallel
Strand 7
A
337 340parallel
Strand 8
A
317 320parallel
Strand 9
A
294 297parallel
Strand 10
A
237 242parallel
Strand 11
A
263 268parallel
Strand 12
A
283 285parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
73 78parallel
Strand 3
A
47 52parallel
Strand 4
A
115 121parallel
Strand 5
A
144 150parallel
Strand 6
A
171 175parallel
Strand 7
A
193 197parallel
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