Analysis of interatomic Contacts of Structural Units in PDB entry:
3K6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K6H entry

There are 2 chains in PDB entry 3K6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ASP 194
B
 SER 5VAL 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3K6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
30 42Right-handed alpha
Helix 3
3
A
60 78Right-handed alpha
Helix 4
4
A
82 91Right-handed alpha
Helix 5
5
A
113 135Right-handed alpha
Helix 6
6
A
144 148Right-handed 310
Helix 7
7
A
149 157Right-handed alpha
Helix 8
8
A
184 188Right-handed alpha
Helix 9
9
B
8 16Right-handed alpha
Helix 10
10
B
20 24Right-handed 310
Helix 11
11
B
30 42Right-handed alpha
Helix 12
12
B
46 50Right-handed 310
Helix 13
13
B
59 78Right-handed alpha
Helix 14
14
B
82 90Right-handed alpha
Helix 15
15
B
113 134Right-handed alpha
Helix 16
16
B
144 148Right-handed 310
Helix 17
17
B
149 157Right-handed alpha
Helix 18
18
B
184 188Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3K6H. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
163 171anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
53 59anti-parallel
Strand 5
B
189 192parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
B
53 58parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
163 171anti-parallel
Strand 5
B
138 142anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il