Analysis of interatomic Contacts of Structural Units in PDB entry:
3K6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K6J entry

There is 1 chain in PDB entry 3K6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -6ASN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3K6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 4Right-handed 310
Helix 2
2
A
6 15Right-handed alpha
Helix 3
3
A
48 61Right-handed alpha
Helix 4
4
A
71 89Right-handed alpha
Helix 5
5
A
93 102Right-handed alpha
Helix 6
6
A
109 113Right-handed 310
Helix 7
7
A
126 139Right-handed alpha
Helix 8
8
A
155 161Right-handed alpha
Helix 9
9
A
165 167Right-handed 310
Helix 10
10
A
193 207Right-handed alpha
Helix 11
11
A
218 239Right-handed alpha
Helix 12
12
A
243 255Right-handed alpha
Helix 13
13
A
259 268Right-handed alpha
Helix 14
14
A
269 279Right-handed alpha
Helix 15
15
A
284 293Right-handed alpha
Helix 16
16
A
297 301Right-handed 310
Helix 17
17
A
317 327Right-handed alpha
Helix 18
18
A
339 361Right-handed alpha
Helix 19
19
A
365 376Right-handed alpha
Helix 20
20
A
396 410Right-handed alpha
Helix 21
21
A
413 417Right-handed 310
Helix 22
22
A
419 426Right-handed alpha
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There are 3 sheets in PDB entry 3K6J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
64 68parallel
Strand 3
A
41 45parallel
Strand 4
A
118 121parallel
Strand 5
A
146 149parallel
Strand 6
A
169 173parallel
Strand 7
A
183 187anti-parallel
Strand 8
A
210 214parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
314 315anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
386 387anti-parallel
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