Analysis of interatomic Contacts of Structural Units in PDB entry:
3K6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K6V entry

There is 1 chain in PDB entry 3K6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 41VAL 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3K6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 66Right-handed alpha
Helix 2
2
A
77 87Right-handed alpha
Helix 3
3
A
101 107Right-handed alpha
Helix 4
4
A
141 148Right-handed alpha
Helix 5
5
A
161 179Right-handed alpha
Helix 6
6
A
182 188Right-handed alpha
Helix 7
7
A
189 192Right-handed 310
Helix 8
8
A
210 215Right-handed alpha
Helix 9
9
A
226 236Right-handed alpha
Helix 10
10
A
246 253Right-handed alpha
Helix 11
11
A
267 269Right-handed 310
Helix 12
12
A
270 275Right-handed alpha
Helix 13
13
A
304 317Right-handed alpha
Helix 14
14
A
317 327Right-handed alpha
Helix 15
15
A
339 343Right-handed 310
Helix 16
16
A
344 349Right-handed alpha
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There are 3 sheets in PDB entry 3K6V. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
42 48parallel
Strand 3
A
94 97parallel
Strand 4
A
293 297anti-parallel
Strand 5
A
115 120anti-parallel
Strand 6
A
331 338anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
153 156parallel
Strand 3
A
241 245parallel
Strand 4
A
123 127anti-parallel
Strand 5
A
255 258anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
277 280parallel
Strand 4
A
286 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il