Analysis of interatomic Contacts of Structural Units in PDB entry:
3K8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K8W entry

There is 1 chain in PDB entry 3K8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 44LEU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3K8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 100Right-handed alpha
Helix 2
2
A
105 130Right-handed alpha
Helix 3
3
A
184 186Right-handed 310
Helix 4
4
A
213 228Right-handed alpha
Helix 5
5
A
228 233Right-handed alpha
Helix 6
6
A
261 266Right-handed alpha
Helix 7
7
A
289 339Right-handed alpha
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There are 4 sheets in PDB entry 3K8W. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
156 160anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
275 280anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
199 200anti-parallel
Strand 3
A
253 256anti-parallel
Strand 4
A
270 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il