Analysis of interatomic Contacts of Structural Units in PDB entry:
3K9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K9R entry

There are 4 chains in PDB entry 3K9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20LEU 121
B
 ASP 21LEU 121
C
 ILE 16LEU 121
D
 ASP 21LEU 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3K9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 29Right-handed alpha
Helix 2
2
A
43 50Right-handed alpha
Helix 3
3
A
62 71Right-handed alpha
Helix 4
4
A
83 96Right-handed alpha
Helix 5
5
A
107 115Right-handed alpha
Helix 6
6
B
21 29Right-handed alpha
Helix 7
7
B
43 49Right-handed alpha
Helix 8
8
B
62 71Right-handed alpha
Helix 9
9
B
83 96Right-handed alpha
Helix 10
10
B
107 115Right-handed alpha
Helix 11
11
C
21 29Right-handed alpha
Helix 12
12
C
43 50Right-handed alpha
Helix 13
13
C
59 61Right-handed 310
Helix 14
14
C
62 71Right-handed alpha
Helix 15
15
C
83 97Right-handed alpha
Helix 16
16
C
107 115Right-handed alpha
Helix 17
17
D
21 29Right-handed alpha
Helix 18
18
D
43 50Right-handed alpha
Helix 19
19
D
59 61Right-handed 310
Helix 20
20
D
62 71Right-handed alpha
Helix 21
21
D
83 97Right-handed alpha
Helix 22
22
D
107 115Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3K9R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
36 40parallel
Strand 3
A
76 80parallel
Strand 4
A
102 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
36 40parallel
Strand 3
B
76 80parallel
Strand 4
B
101 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
36 40parallel
Strand 3
C
76 80parallel
Strand 4
C
102 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
36 40parallel
Strand 3
D
76 80parallel
Strand 4
D
102 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
119 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il