Analysis of interatomic Contacts of Structural Units in PDB entry:
3KAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KAJ entry

There are 2 chains in PDB entry 3KAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 29THR 499
B
 PHE 29THR 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3KAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
35 53Right-handed alpha
Helix 3
3
A
86 110Right-handed alpha
Helix 4
4
A
110 118Right-handed alpha
Helix 5
5
A
125 142Right-handed alpha
Helix 6
6
A
177 200Right-handed alpha
Helix 7
7
A
202 206Right-handed 310
Helix 8
8
A
210 227Right-handed alpha
Helix 9
9
A
243 257Right-handed alpha
Helix 10
10
A
266 273Right-handed alpha
Helix 11
11
A
299 303Right-handed 310
Helix 12
12
A
305 318Right-handed alpha
Helix 13
13
A
325 332Right-handed alpha
Helix 14
14
A
333 341Right-handed alpha
Helix 15
15
A
345 349Right-handed 310
Helix 16
16
A
352 363Right-handed alpha
Helix 17
17
A
381 383Right-handed 310
Helix 18
18
A
399 408Right-handed alpha
Helix 19
19
B
35 53Right-handed alpha
Helix 20
20
B
86 110Right-handed alpha
Helix 21
21
B
110 118Right-handed alpha
Helix 22
22
B
125 142Right-handed alpha
Helix 23
23
B
177 200Right-handed alpha
Helix 24
24
B
202 206Right-handed 310
Helix 25
25
B
210 227Right-handed alpha
Helix 26
26
B
243 257Right-handed alpha
Helix 27
27
B
266 274Right-handed alpha
Helix 28
28
B
299 303Right-handed 310
Helix 29
29
B
305 318Right-handed alpha
Helix 30
30
B
325 332Right-handed alpha
Helix 31
31
B
333 342Right-handed alpha
Helix 32
32
B
345 350Right-handed 310
Helix 33
33
B
352 363Right-handed alpha
Helix 34
34
B
375 380Right-handed alpha
Helix 35
35
B
381 383Right-handed 310
Helix 36
36
B
404 409Right-handed alpha
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There are 12 sheets in PDB entry 3KAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
73 75anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 171first strand
Strand 2
A
147 159anti-parallel
Strand 3
A
441 460anti-parallel
Strand 4
A
463 478anti-parallel
Strand 5
A
492 494anti-parallel
Strand 6
A
78 79parallel
Strand 7
A
432 438anti-parallel
Strand 8
A
441 460anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
496 498parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
232 236parallel
Strand 3
A
287 294parallel
Strand 4
A
282 284anti-parallel
Strand 5
A
274 276anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
232 236parallel
Strand 3
A
287 294parallel
Strand 4
A
321 323parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
385 388anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
73 75anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 171first strand
Strand 2
B
148 158anti-parallel
Strand 3
B
441 459anti-parallel
Strand 4
B
464 478anti-parallel
Strand 5
B
492 494anti-parallel
Strand 6
B
78 79parallel
Strand 7
B
432 438anti-parallel
Strand 8
B
441 459anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
496 498parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
232 236parallel
Strand 3
B
287 294parallel
Strand 4
B
282 284anti-parallel
Strand 5
B
275 276anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
232 236parallel
Strand 3
B
287 294parallel
Strand 4
B
321 323parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
423 425anti-parallel
Strand 3
B
385 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il