Analysis of interatomic Contacts of Structural Units in PDB entry:
3KBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KBH entry

There are 8 chains in PDB entry 3KBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 19ALA 614
E
HIS 482GLU 602
B
SER 19ALA 614
F
HIS 482GLU 602
C
SER 19ALA 614
G
HIS 482GLU 602
D
SER 19ALA 614
H
HIS 482GLU 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 3KBH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 53Right-handed alpha
Helix 2
2
A
60 81Right-handed alpha
Helix 3
3
A
84 88Right-handed 310
Helix 4
4
A
90 101Right-handed alpha
Helix 5
5
A
109 129Right-handed alpha
Helix 6
6
A
146 155Right-handed alpha
Helix 7
7
A
157 172Right-handed alpha
Helix 8
8
A
175 194Right-handed alpha
Helix 9
9
A
198 205Right-handed alpha
Helix 10
10
A
206 208Right-handed 310
Helix 11
11
A
220 231Right-handed alpha
Helix 12
12
A
233 252Right-handed alpha
Helix 13
13
A
265 267Right-handed 310
Helix 14
14
A
293 299Right-handed alpha
Helix 15
15
A
303 317Right-handed alpha
Helix 16
16
A
326 331Right-handed alpha
Helix 17
17
A
365 386Right-handed alpha
Helix 18
18
A
389 393Right-handed 310
Helix 19
19
A
399 413Right-handed alpha
Helix 20
20
A
414 421Right-handed alpha
Helix 21
21
A
431 465Right-handed alpha
Helix 22
22
A
472 484Right-handed alpha
Helix 23
23
A
498 502Right-handed 310
Helix 24
24
A
503 508Right-handed alpha
Helix 25
25
A
512 533Right-handed alpha
Helix 26
26
A
538 542Right-handed 310
Helix 27
27
A
547 559Right-handed alpha
Helix 28
28
A
565 574Right-handed alpha
Helix 29
29
A
581 588Right-handed alpha
Helix 30
30
A
588 599Right-handed alpha
Helix 31
31
B
20 53Right-handed alpha
Helix 32
32
B
60 81Right-handed alpha
Helix 33
33
B
84 88Right-handed 310
Helix 34
34
B
90 101Right-handed alpha
Helix 35
35
B
109 129Right-handed alpha
Helix 36
36
B
146 155Right-handed alpha
Helix 37
37
B
157 172Right-handed alpha
Helix 38
38
B
175 194Right-handed alpha
Helix 39
39
B
198 205Right-handed alpha
Helix 40
40
B
206 208Right-handed 310
Helix 41
41
B
220 252Right-handed alpha
Helix 42
42
B
265 267Right-handed 310
Helix 43
43
B
293 299Right-handed alpha
Helix 44
44
B
303 317Right-handed alpha
Helix 45
45
B
326 331Right-handed alpha
Helix 46
46
B
365 386Right-handed alpha
Helix 47
47
B
389 393Right-handed 310
Helix 48
48
B
399 413Right-handed alpha
Helix 49
49
B
414 421Right-handed alpha
Helix 50
50
B
431 465Right-handed alpha
Helix 51
51
B
472 484Right-handed alpha
Helix 52
52
B
498 502Right-handed 310
Helix 53
53
B
503 508Right-handed alpha
Helix 54
54
B
512 533Right-handed alpha
Helix 55
55
B
538 542Right-handed 310
Helix 56
56
B
547 559Right-handed alpha
Helix 57
57
B
565 574Right-handed alpha
Helix 58
58
B
581 588Right-handed alpha
Helix 59
59
B
588 599Right-handed alpha
Helix 60
60
C
20 53Right-handed alpha
Helix 61
61
C
60 81Right-handed alpha
Helix 62
62
C
84 88Right-handed 310
Helix 63
63
C
90 101Right-handed alpha
Helix 64
64
C
109 129Right-handed alpha
Helix 65
65
C
146 155Right-handed alpha
Helix 66
66
C
157 172Right-handed alpha
Helix 67
67
C
175 194Right-handed alpha
Helix 68
68
C
198 205Right-handed alpha
Helix 69
69
C
206 208Right-handed 310
Helix 70
70
C
220 252Right-handed alpha
Helix 71
71
C
265 267Right-handed 310
Helix 72
72
C
293 299Right-handed alpha
Helix 73
73
C
303 317Right-handed alpha
Helix 74
74
C
326 331Right-handed alpha
Helix 75
75
C
365 386Right-handed alpha
Helix 76
76
C
389 393Right-handed 310
Helix 77
77
C
399 413Right-handed alpha
Helix 78
78
C
414 421Right-handed alpha
Helix 79
79
C
431 465Right-handed alpha
Helix 80
80
C
472 485Right-handed alpha
Helix 81
81
C
498 502Right-handed 310
Helix 82
82
C
503 508Right-handed alpha
Helix 83
83
C
512 533Right-handed alpha
Helix 84
84
C
538 542Right-handed 310
Helix 85
85
C
547 559Right-handed alpha
Helix 86
86
C
565 574Right-handed alpha
Helix 87
87
C
581 588Right-handed alpha
Helix 88
88
C
588 599Right-handed alpha
Helix 89
89
D
20 53Right-handed alpha
Helix 90
90
D
60 81Right-handed alpha
Helix 91
91
D
84 88Right-handed 310
Helix 92
92
D
90 101Right-handed alpha
Helix 93
93
D
109 129Right-handed alpha
Helix 94
94
D
146 155Right-handed alpha
Helix 95
95
D
157 172Right-handed alpha
Helix 96
96
D
175 194Right-handed alpha
Helix 97
97
D
198 205Right-handed alpha
Helix 98
98
D
206 208Right-handed 310
Helix 99
99
D
220 250Right-handed alpha
Helix 100
100
D
265 267Right-handed 310
Helix 101
101
D
293 299Right-handed alpha
Helix 102
102
D
303 317Right-handed alpha
Helix 103
103
D
365 386Right-handed alpha
Helix 104
104
D
389 393Right-handed 310
Helix 105
105
D
399 413Right-handed alpha
Helix 106
106
D
414 421Right-handed alpha
Helix 107
107
D
431 465Right-handed alpha
Helix 108
108
D
472 486Right-handed alpha
Helix 109
109
D
498 502Right-handed 310
Helix 110
110
D
503 508Right-handed alpha
Helix 111
111
D
512 533Right-handed alpha
Helix 112
112
D
538 542Right-handed 310
Helix 113
113
D
547 559Right-handed alpha
Helix 114
114
D
565 574Right-handed alpha
Helix 115
115
D
581 588Right-handed alpha
Helix 116
116
D
588 599Right-handed alpha
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There are 20 sheets in PDB entry 3KBH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
505 509first strand
Strand 2
E
483 491anti-parallel
Strand 3
E
522 530parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
514 516first strand
Strand 2
E
567 569anti-parallel
Strand 3
E
589 599anti-parallel
Strand 4
E
579 585anti-parallel
Strand 5
E
541 545anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 133first strand
Strand 2
B
141 143anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
347 350first strand
Strand 2
B
356 359anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
505 509first strand
Strand 2
F
483 491anti-parallel
Strand 3
F
522 530parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
514 516first strand
Strand 2
F
567 569anti-parallel
Strand 3
F
589 599anti-parallel
Strand 4
F
579 585anti-parallel
Strand 5
F
541 545anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
347 350first strand
Strand 2
C
356 359anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
502 509first strand
Strand 2
G
483 493anti-parallel
Strand 3
G
522 530parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
514 516first strand
Strand 2
G
567 569anti-parallel
Strand 3
G
589 599anti-parallel
Strand 4
G
579 585anti-parallel
Strand 5
G
541 545anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 133first strand
Strand 2
D
141 143anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
262 263first strand
Strand 2
D
487 488parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
347 350first strand
Strand 2
D
356 359anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
502 509first strand
Strand 2
H
483 493anti-parallel
Strand 3
H
522 530parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
514 516first strand
Strand 2
H
567 569anti-parallel
Strand 3
H
589 599anti-parallel
Strand 4
H
579 585anti-parallel
Strand 5
H
541 545anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il