Analysis of interatomic Contacts of Structural Units in PDB entry:
3KCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KCM entry

There are 6 chains in PDB entry 3KCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27GLU 165
B
 LEU 27SER 167
C
 GLU 28LEU 166
D
 GLU 29ARG 170
E
 GLU 29ALA 169
F
 GLU 29LEU 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3KCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 51Right-handed 310
Helix 2
2
A
64 81Right-handed alpha
Helix 3
3
A
96 109Right-handed alpha
Helix 4
4
A
120 127Right-handed alpha
Helix 5
5
A
155 164Right-handed alpha
Helix 6
6
B
48 51Right-handed 310
Helix 7
7
B
64 81Right-handed alpha
Helix 8
8
B
96 109Right-handed alpha
Helix 9
9
B
120 126Right-handed alpha
Helix 10
10
B
155 165Right-handed alpha
Helix 11
11
C
48 51Right-handed 310
Helix 12
12
C
64 81Right-handed alpha
Helix 13
13
C
96 109Right-handed alpha
Helix 14
14
C
120 126Right-handed alpha
Helix 15
15
C
155 166Right-handed alpha
Helix 16
16
D
48 51Right-handed 310
Helix 17
17
D
64 81Right-handed alpha
Helix 18
18
D
96 109Right-handed alpha
Helix 19
19
D
120 126Right-handed alpha
Helix 20
20
D
155 167Right-handed alpha
Helix 21
21
E
48 51Right-handed 310
Helix 22
22
E
64 81Right-handed alpha
Helix 23
23
E
96 109Right-handed alpha
Helix 24
24
E
120 126Right-handed alpha
Helix 25
25
E
155 168Right-handed alpha
Helix 26
26
F
48 51Right-handed 310
Helix 27
27
F
64 81Right-handed alpha
Helix 28
28
F
96 109Right-handed alpha
Helix 29
29
F
120 126Right-handed alpha
Helix 30
30
F
155 164Right-handed alpha
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There are 12 sheets in PDB entry 3KCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
44 46anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
86 92parallel
Strand 3
A
54 60parallel
Strand 4
A
133 137anti-parallel
Strand 5
A
143 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
44 46anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
86 92parallel
Strand 3
B
54 60parallel
Strand 4
B
133 137anti-parallel
Strand 5
B
143 148anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
44 46anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 116first strand
Strand 2
C
86 92parallel
Strand 3
C
54 60parallel
Strand 4
C
133 137anti-parallel
Strand 5
C
143 148anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
D
86 92parallel
Strand 3
D
54 60parallel
Strand 4
D
133 137anti-parallel
Strand 5
D
143 148anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 38first strand
Strand 2
E
44 46anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 116first strand
Strand 2
E
86 92parallel
Strand 3
E
54 60parallel
Strand 4
E
133 137anti-parallel
Strand 5
E
143 148anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 38first strand
Strand 2
F
44 46anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
114 116first strand
Strand 2
F
86 92parallel
Strand 3
F
54 60parallel
Strand 4
F
133 137anti-parallel
Strand 5
F
143 148anti-parallel
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