Analysis of interatomic Contacts of Structural Units in PDB entry:
3KCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KCQ entry

There are 4 chains in PDB entry 3KCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASN 210
B
 LYS 3GLU 209
C
 LYS 3PHE 211
D
 LYS 3GLU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3KCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
92 99Right-handed alpha
Helix 5
5
A
118 127Right-handed alpha
Helix 6
6
A
160 185Right-handed alpha
Helix 7
7
B
15 25Right-handed alpha
Helix 8
8
B
45 53Right-handed alpha
Helix 9
9
B
66 77Right-handed alpha
Helix 10
10
B
92 99Right-handed alpha
Helix 11
11
B
118 127Right-handed alpha
Helix 12
12
B
160 185Right-handed alpha
Helix 13
13
C
15 26Right-handed alpha
Helix 14
14
C
45 53Right-handed alpha
Helix 15
15
C
66 77Right-handed alpha
Helix 16
16
C
92 99Right-handed alpha
Helix 17
17
C
118 127Right-handed alpha
Helix 18
18
C
160 185Right-handed alpha
Helix 19
19
D
15 25Right-handed alpha
Helix 20
20
D
45 53Right-handed alpha
Helix 21
21
D
66 77Right-handed alpha
Helix 22
22
D
92 99Right-handed alpha
Helix 23
23
D
118 127Right-handed alpha
Helix 24
24
D
160 185Right-handed alpha
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There are 8 sheets in PDB entry 3KCQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
32 39parallel
Strand 3
A
5 11parallel
Strand 4
A
81 84parallel
Strand 5
A
103 107parallel
Strand 6
A
130 137anti-parallel
Strand 7
A
147 154anti-parallel
Strand 8
A
205 207parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
196 198anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
32 39parallel
Strand 3
B
5 11parallel
Strand 4
B
81 84parallel
Strand 5
B
103 107parallel
Strand 6
B
130 137anti-parallel
Strand 7
B
147 154anti-parallel
Strand 8
B
205 207parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
196 198anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
32 39parallel
Strand 3
C
5 11parallel
Strand 4
C
81 84parallel
Strand 5
C
103 107parallel
Strand 6
C
130 137anti-parallel
Strand 7
C
147 154anti-parallel
Strand 8
C
205 207parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
C
196 198anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
32 39parallel
Strand 3
D
5 11parallel
Strand 4
D
81 84parallel
Strand 5
D
103 107parallel
Strand 6
D
130 137anti-parallel
Strand 7
D
147 154anti-parallel
Strand 8
D
205 207parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 190first strand
Strand 2
D
196 198anti-parallel
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