Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KDJ entry

There are 2 chains in PDB entry 3KDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31ASN 209
B
 LEU 128ARG 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3KDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 48Right-handed alpha
Helix 2
2
A
68 77Right-handed alpha
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
182 209Right-handed alpha
Helix 5
5
B
165 170Right-handed 310
Helix 6
6
B
182 204Right-handed alpha
Helix 7
7
B
206 209Right-handed 310
Helix 8
8
B
210 232Right-handed alpha
Helix 9
9
B
233 235Right-handed 310
Helix 10
10
B
283 293Right-handed alpha
Helix 11
11
B
318 321Right-handed 310
Helix 12
12
B
346 351Right-handed alpha
Helix 13
13
B
354 370Right-handed alpha
Helix 14
14
B
392 409Right-handed alpha
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There are 5 sheets in PDB entry 3KDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 65first strand
Strand 2
A
163 176anti-parallel
Strand 3
A
148 159anti-parallel
Strand 4
A
132 141anti-parallel
Strand 5
A
118 127anti-parallel
Strand 6
A
105 110anti-parallel
Strand 7
A
89 93anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 134first strand
Strand 2
B
415 421anti-parallel
Strand 3
B
339 345anti-parallel
Strand 4
B
263 268anti-parallel
Strand 5
B
271 274anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 148first strand
Strand 2
B
171 179anti-parallel
Strand 3
B
241 242anti-parallel
Strand 4
B
315 316anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 148first strand
Strand 2
B
171 179anti-parallel
Strand 3
B
244 249anti-parallel
Strand 4
B
253 259anti-parallel
Strand 5
B
329 334anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
303 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il