Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KDN entry

There are 20 chains in PDB entry 3KDN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	MET 188
A	ASP 190	VAL 444
B	ILE 8	MET 188
B	ASP 190	VAL 444
C	ILE 8	MET 188
C	ASP 190	VAL 444
D	ILE 8	MET 188
D	ASP 190	VAL 444
E	THR 7	MET 188
E	ASP 190	VAL 444
F	ILE 8	MET 188
F	ASP 190	VAL 444
G	ILE 8	MET 188
G	ASP 190	VAL 444
H	THR 7	MET 188
H	ASP 190	VAL 444
I	TYR 9	MET 188
I	ASP 190	VAL 444
J	ILE 8	MET 188
J	ASP 190	VAL 444

There are215 helices in PDB entry 3KDN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	13	Right-handed 310
Helix 2	2	A	38	50	Right-handed alpha
Helix 3	3	A	63	71	Right-handed alpha
Helix 4	4	A	94	96	Right-handed 310
Helix 5	5	A	100	109	Right-handed alpha
Helix 6	6	A	110	115	Right-handed 310
Helix 7	7	A	129	134	Right-handed alpha
Helix 8	8	A	141	151	Right-handed alpha
Helix 9	9	A	169	183	Right-handed alpha
Helix 10	10	A	201	221	Right-handed alpha
Helix 11	11	A	233	248	Right-handed alpha
Helix 12	12	A	256	260	Right-handed alpha
Helix 13	13	A	260	275	Right-handed alpha
Helix 14	14	A	285	290	Right-handed alpha
Helix 15	15	A	297	309	Right-handed alpha
Helix 16	16	A	326	339	Right-handed alpha
Helix 17	17	A	375	383	Right-handed alpha
Helix 18	18	A	391	396	Right-handed alpha
Helix 19	19	A	400	416	Right-handed alpha
Helix 20	20	A	420	426	Right-handed alpha
Helix 21	21	A	428	439	Right-handed alpha
Helix 22	22	B	8	13	Right-handed 310
Helix 23	23	B	38	50	Right-handed alpha
Helix 24	24	B	63	71	Right-handed alpha
Helix 25	25	B	94	96	Right-handed 310
Helix 26	26	B	100	109	Right-handed alpha
Helix 27	27	B	110	115	Right-handed 310
Helix 28	28	B	129	134	Right-handed alpha
Helix 29	29	B	141	151	Right-handed alpha
Helix 30	30	B	169	183	Right-handed alpha
Helix 31	31	B	201	221	Right-handed alpha
Helix 32	32	B	233	247	Right-handed alpha
Helix 33	33	B	256	260	Right-handed alpha
Helix 34	34	B	260	274	Right-handed alpha
Helix 35	35	B	285	290	Right-handed alpha
Helix 36	36	B	297	309	Right-handed alpha
Helix 37	37	B	326	339	Right-handed alpha
Helix 38	38	B	375	383	Right-handed alpha
Helix 39	39	B	391	396	Right-handed alpha
Helix 40	40	B	400	418	Right-handed alpha
Helix 41	41	B	420	425	Right-handed alpha
Helix 42	42	B	428	439	Right-handed alpha
Helix 43	43	C	8	13	Right-handed 310
Helix 44	44	C	38	50	Right-handed alpha
Helix 45	45	C	63	70	Right-handed alpha
Helix 46	46	C	94	96	Right-handed 310
Helix 47	47	C	100	109	Right-handed alpha
Helix 48	48	C	110	115	Right-handed 310
Helix 49	49	C	129	134	Right-handed alpha
Helix 50	50	C	141	151	Right-handed alpha
Helix 51	51	C	169	183	Right-handed alpha
Helix 52	52	C	201	221	Right-handed alpha
Helix 53	53	C	233	248	Right-handed alpha
Helix 54	54	C	256	260	Right-handed alpha
Helix 55	55	C	260	274	Right-handed alpha
Helix 56	56	C	285	290	Right-handed alpha
Helix 57	57	C	297	309	Right-handed alpha
Helix 58	58	C	326	339	Right-handed alpha
Helix 59	59	C	371	374	Right-handed 310
Helix 60	60	C	375	383	Right-handed alpha
Helix 61	61	C	391	396	Right-handed alpha
Helix 62	62	C	400	417	Right-handed alpha
Helix 63	63	C	420	426	Right-handed alpha
Helix 64	64	C	428	439	Right-handed alpha
Helix 65	65	D	9	13	Right-handed 310
Helix 66	66	D	38	50	Right-handed alpha
Helix 67	67	D	63	71	Right-handed alpha
Helix 68	68	D	94	96	Right-handed 310
Helix 69	69	D	100	109	Right-handed alpha
Helix 70	70	D	110	115	Right-handed 310
Helix 71	71	D	129	134	Right-handed alpha
Helix 72	72	D	141	151	Right-handed alpha
Helix 73	73	D	169	183	Right-handed alpha
Helix 74	74	D	201	221	Right-handed alpha
Helix 75	75	D	233	248	Right-handed alpha
Helix 76	76	D	256	260	Right-handed alpha
Helix 77	77	D	260	274	Right-handed alpha
Helix 78	78	D	285	290	Right-handed alpha
Helix 79	79	D	297	309	Right-handed alpha
Helix 80	80	D	326	339	Right-handed alpha
Helix 81	81	D	371	374	Right-handed 310
Helix 82	82	D	375	383	Right-handed alpha
Helix 83	83	D	391	396	Right-handed alpha
Helix 84	84	D	400	418	Right-handed alpha
Helix 85	85	D	420	425	Right-handed alpha
Helix 86	86	D	428	439	Right-handed alpha
Helix 87	87	E	8	13	Right-handed 310
Helix 88	88	E	38	50	Right-handed alpha
Helix 89	89	E	63	71	Right-handed alpha
Helix 90	90	E	94	96	Right-handed 310
Helix 91	91	E	100	109	Right-handed alpha
Helix 92	92	E	110	115	Right-handed 310
Helix 93	93	E	129	134	Right-handed alpha
Helix 94	94	E	141	151	Right-handed alpha
Helix 95	95	E	169	183	Right-handed alpha
Helix 96	96	E	201	221	Right-handed alpha
Helix 97	97	E	233	247	Right-handed alpha
Helix 98	98	E	256	260	Right-handed alpha
Helix 99	99	E	260	275	Right-handed alpha
Helix 100	100	E	285	290	Right-handed alpha
Helix 101	101	E	297	309	Right-handed alpha
Helix 102	102	E	326	339	Right-handed alpha
Helix 103	103	E	374	383	Right-handed alpha
Helix 104	104	E	391	396	Right-handed alpha
Helix 105	105	E	400	417	Right-handed alpha
Helix 106	106	E	420	426	Right-handed alpha
Helix 107	107	E	428	439	Right-handed alpha
Helix 108	108	F	9	13	Right-handed 310
Helix 109	109	F	38	50	Right-handed alpha
Helix 110	110	F	63	70	Right-handed alpha
Helix 111	111	F	94	96	Right-handed 310
Helix 112	112	F	100	109	Right-handed alpha
Helix 113	113	F	110	115	Right-handed 310
Helix 114	114	F	129	134	Right-handed alpha
Helix 115	115	F	141	151	Right-handed alpha
Helix 116	116	F	169	183	Right-handed alpha
Helix 117	117	F	201	221	Right-handed alpha
Helix 118	118	F	233	247	Right-handed alpha
Helix 119	119	F	256	260	Right-handed alpha
Helix 120	120	F	260	274	Right-handed alpha
Helix 121	121	F	285	290	Right-handed alpha
Helix 122	122	F	297	309	Right-handed alpha
Helix 123	123	F	326	339	Right-handed alpha
Helix 124	124	F	371	374	Right-handed 310
Helix 125	125	F	375	383	Right-handed alpha
Helix 126	126	F	391	396	Right-handed alpha
Helix 127	127	F	400	417	Right-handed alpha
Helix 128	128	F	420	426	Right-handed alpha
Helix 129	129	F	428	439	Right-handed alpha
Helix 130	130	G	8	13	Right-handed 310
Helix 131	131	G	38	50	Right-handed alpha
Helix 132	132	G	63	71	Right-handed alpha
Helix 133	133	G	94	96	Right-handed 310
Helix 134	134	G	100	109	Right-handed alpha
Helix 135	135	G	110	115	Right-handed 310
Helix 136	136	G	129	134	Right-handed alpha
Helix 137	137	G	141	151	Right-handed alpha
Helix 138	138	G	169	183	Right-handed alpha
Helix 139	139	G	201	221	Right-handed alpha
Helix 140	140	G	233	247	Right-handed alpha
Helix 141	141	G	256	260	Right-handed alpha
Helix 142	142	G	260	274	Right-handed alpha
Helix 143	143	G	285	290	Right-handed alpha
Helix 144	144	G	297	309	Right-handed alpha
Helix 145	145	G	326	339	Right-handed alpha
Helix 146	146	G	371	374	Right-handed 310
Helix 147	147	G	375	383	Right-handed alpha
Helix 148	148	G	391	396	Right-handed alpha
Helix 149	149	G	400	418	Right-handed alpha
Helix 150	150	G	420	425	Right-handed alpha
Helix 151	151	G	428	439	Right-handed alpha
Helix 152	152	H	7	13	Right-handed 310
Helix 153	153	H	38	50	Right-handed alpha
Helix 154	154	H	63	71	Right-handed alpha
Helix 155	155	H	94	96	Right-handed 310
Helix 156	156	H	100	109	Right-handed alpha
Helix 157	157	H	110	115	Right-handed 310
Helix 158	158	H	129	134	Right-handed alpha
Helix 159	159	H	141	151	Right-handed alpha
Helix 160	160	H	169	183	Right-handed alpha
Helix 161	161	H	201	221	Right-handed alpha
Helix 162	162	H	233	247	Right-handed alpha
Helix 163	163	H	256	260	Right-handed alpha
Helix 164	164	H	260	274	Right-handed alpha
Helix 165	165	H	285	290	Right-handed alpha
Helix 166	166	H	297	309	Right-handed alpha
Helix 167	167	H	326	339	Right-handed alpha
Helix 168	168	H	375	383	Right-handed alpha
Helix 169	169	H	391	396	Right-handed alpha
Helix 170	170	H	400	417	Right-handed alpha
Helix 171	171	H	420	426	Right-handed alpha
Helix 172	172	H	428	439	Right-handed alpha
Helix 173	173	I	9	13	Right-handed 310
Helix 174	174	I	38	50	Right-handed alpha
Helix 175	175	I	63	71	Right-handed alpha
Helix 176	176	I	94	96	Right-handed 310
Helix 177	177	I	100	109	Right-handed alpha
Helix 178	178	I	110	115	Right-handed 310
Helix 179	179	I	129	134	Right-handed alpha
Helix 180	180	I	141	151	Right-handed alpha
Helix 181	181	I	169	183	Right-handed alpha
Helix 182	182	I	201	221	Right-handed alpha
Helix 183	183	I	233	248	Right-handed alpha
Helix 184	184	I	256	260	Right-handed alpha
Helix 185	185	I	260	274	Right-handed alpha
Helix 186	186	I	285	290	Right-handed alpha
Helix 187	187	I	297	309	Right-handed alpha
Helix 188	188	I	326	339	Right-handed alpha
Helix 189	189	I	371	374	Right-handed 310
Helix 190	190	I	375	383	Right-handed alpha
Helix 191	191	I	391	396	Right-handed alpha
Helix 192	192	I	400	418	Right-handed alpha
Helix 193	193	I	420	425	Right-handed alpha
Helix 194	194	I	428	439	Right-handed alpha
Helix 195	195	J	8	13	Right-handed 310
Helix 196	196	J	38	50	Right-handed alpha
Helix 197	197	J	63	71	Right-handed alpha
Helix 198	198	J	94	96	Right-handed 310
Helix 199	199	J	100	109	Right-handed alpha
Helix 200	200	J	110	115	Right-handed 310
Helix 201	201	J	129	134	Right-handed alpha
Helix 202	202	J	141	151	Right-handed alpha
Helix 203	203	J	169	183	Right-handed alpha
Helix 204	204	J	201	221	Right-handed alpha
Helix 205	205	J	233	247	Right-handed alpha
Helix 206	206	J	256	260	Right-handed alpha
Helix 207	207	J	260	274	Right-handed alpha
Helix 208	208	J	285	290	Right-handed alpha
Helix 209	209	J	297	309	Right-handed alpha
Helix 210	210	J	326	339	Right-handed alpha
Helix 211	211	J	374	383	Right-handed alpha
Helix 212	212	J	391	396	Right-handed alpha
Helix 213	213	J	400	417	Right-handed alpha
Helix 214	214	J	420	426	Right-handed alpha
Helix 215	215	J	428	439	Right-handed alpha

There are 30 sheets in PDB entry 3KDN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	85	92	anti-parallel
Strand 3	A	24	33	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	295	296	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	187	189	parallel
Strand 3	A	225	229	parallel
Strand 4	A	251	255	parallel
Strand 5	A	277	281	parallel
Strand 6	A	312	314	parallel
Strand 7	A	363	367	parallel
Strand 8	A	387	389	parallel
Strand 9	A	157	160	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	354	355	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	79	first strand
Strand 2	B	85	92	anti-parallel
Strand 3	B	24	33	anti-parallel
Strand 4	B	118	127	anti-parallel
Strand 5	B	295	296	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	187	189	parallel
Strand 3	B	225	229	parallel
Strand 4	B	251	255	parallel
Strand 5	B	277	281	parallel
Strand 6	B	312	314	parallel
Strand 7	B	363	367	parallel
Strand 8	B	387	389	parallel
Strand 9	B	157	160	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	354	355	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	79	first strand
Strand 2	C	85	92	anti-parallel
Strand 3	C	24	33	anti-parallel
Strand 4	C	118	127	anti-parallel
Strand 5	C	295	296	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	187	189	parallel
Strand 3	C	225	229	parallel
Strand 4	C	251	255	parallel
Strand 5	C	277	281	parallel
Strand 6	C	312	314	parallel
Strand 7	C	363	367	parallel
Strand 8	C	387	389	parallel
Strand 9	C	157	160	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	354	355	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	79	first strand
Strand 2	D	85	92	anti-parallel
Strand 3	D	24	33	anti-parallel
Strand 4	D	118	127	anti-parallel
Strand 5	D	295	296	parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	187	189	parallel
Strand 3	D	225	229	parallel
Strand 4	D	251	255	parallel
Strand 5	D	277	281	parallel
Strand 6	D	312	314	parallel
Strand 7	D	363	367	parallel
Strand 8	D	387	389	parallel
Strand 9	D	157	160	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	354	355	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	79	first strand
Strand 2	E	85	92	anti-parallel
Strand 3	E	24	33	anti-parallel
Strand 4	E	118	127	anti-parallel
Strand 5	E	295	296	parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	187	189	parallel
Strand 3	E	225	229	parallel
Strand 4	E	251	255	parallel
Strand 5	E	277	281	parallel
Strand 6	E	312	314	parallel
Strand 7	E	363	367	parallel
Strand 8	E	387	389	parallel
Strand 9	E	157	160	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	341	342	first strand
Strand 2	E	354	355	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	79	first strand
Strand 2	F	85	92	anti-parallel
Strand 3	F	24	33	anti-parallel
Strand 4	F	118	127	anti-parallel
Strand 5	F	295	296	parallel

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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	160	first strand
Strand 2	F	187	189	parallel
Strand 3	F	225	229	parallel
Strand 4	F	251	255	parallel
Strand 5	F	277	281	parallel
Strand 6	F	312	314	parallel
Strand 7	F	363	367	parallel
Strand 8	F	387	389	parallel
Strand 9	F	157	160	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	342	first strand
Strand 2	F	354	355	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	79	first strand
Strand 2	G	85	92	anti-parallel
Strand 3	G	24	33	anti-parallel
Strand 4	G	118	127	anti-parallel
Strand 5	G	295	296	parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	160	first strand
Strand 2	G	187	189	parallel
Strand 3	G	225	229	parallel
Strand 4	G	251	255	parallel
Strand 5	G	277	281	parallel
Strand 6	G	312	314	parallel
Strand 7	G	363	367	parallel
Strand 8	G	387	389	parallel
Strand 9	G	157	160	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	341	342	first strand
Strand 2	G	354	355	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	79	first strand
Strand 2	H	85	92	anti-parallel
Strand 3	H	24	33	anti-parallel
Strand 4	H	118	127	anti-parallel
Strand 5	H	295	296	parallel

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There are 9 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	187	189	parallel
Strand 3	H	225	229	parallel
Strand 4	H	251	255	parallel
Strand 5	H	277	281	parallel
Strand 6	H	312	314	parallel
Strand 7	H	363	367	parallel
Strand 8	H	387	389	parallel
Strand 9	H	157	160	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	341	342	first strand
Strand 2	H	354	355	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	79	first strand
Strand 2	I	85	92	anti-parallel
Strand 3	I	24	33	anti-parallel
Strand 4	I	118	127	anti-parallel
Strand 5	I	295	296	parallel

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There are 9 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	160	first strand
Strand 2	I	187	189	parallel
Strand 3	I	225	229	parallel
Strand 4	I	251	255	parallel
Strand 5	I	277	281	parallel
Strand 6	I	312	314	parallel
Strand 7	I	363	367	parallel
Strand 8	I	387	389	parallel
Strand 9	I	157	160	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	341	342	first strand
Strand 2	I	354	355	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	79	first strand
Strand 2	J	85	92	anti-parallel
Strand 3	J	24	33	anti-parallel
Strand 4	J	118	127	anti-parallel
Strand 5	J	295	296	parallel

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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	160	first strand
Strand 2	J	187	189	parallel
Strand 3	J	225	229	parallel
Strand 4	J	251	255	parallel
Strand 5	J	277	281	parallel
Strand 6	J	312	314	parallel
Strand 7	J	363	367	parallel
Strand 8	J	387	389	parallel
Strand 9	J	157	160	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	341	342	first strand
Strand 2	J	354	355	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 3KDN

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDN