Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KDR entry

There are 3 chains in PDB entry 3KDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 46THR 336
B
 GLU 45THR 337
C
 LEU 43THR 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3KDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed alpha
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
98 114Right-handed alpha
Helix 4
4
A
135 137Right-handed 310
Helix 5
5
A
154 156Right-handed 310
Helix 6
6
A
167 172Right-handed alpha
Helix 7
7
A
172 192Right-handed alpha
Helix 8
8
A
208 224Right-handed alpha
Helix 9
9
A
246 266Right-handed alpha
Helix 10
10
A
285 296Right-handed alpha
Helix 11
11
A
298 310Right-handed alpha
Helix 12
12
A
327 334Right-handed alpha
Helix 13
13
B
49 55Right-handed alpha
Helix 14
14
B
56 73Right-handed alpha
Helix 15
15
B
98 113Right-handed alpha
Helix 16
16
B
135 137Right-handed 310
Helix 17
17
B
154 156Right-handed 310
Helix 18
18
B
167 172Right-handed alpha
Helix 19
19
B
172 192Right-handed alpha
Helix 20
20
B
208 224Right-handed alpha
Helix 21
21
B
225 228Right-handed 310
Helix 22
22
B
246 266Right-handed alpha
Helix 23
23
B
268 273Right-handed 310
Helix 24
24
B
285 297Right-handed alpha
Helix 25
25
B
298 310Right-handed alpha
Helix 26
26
B
327 334Right-handed alpha
Helix 27
27
C
49 54Right-handed alpha
Helix 28
28
C
56 73Right-handed alpha
Helix 29
29
C
98 114Right-handed alpha
Helix 30
30
C
135 137Right-handed 310
Helix 31
31
C
154 156Right-handed 310
Helix 32
32
C
167 172Right-handed alpha
Helix 33
33
C
172 192Right-handed alpha
Helix 34
34
C
208 224Right-handed alpha
Helix 35
35
C
225 230Right-handed 310
Helix 36
36
C
246 265Right-handed alpha
Helix 37
37
C
268 273Right-handed 310
Helix 38
38
C
285 297Right-handed alpha
Helix 39
39
C
298 310Right-handed alpha
Helix 40
40
C
327 334Right-handed alpha
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There are 12 sheets in PDB entry 3KDR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
323 325anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
158 162anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
146 148anti-parallel
Strand 3
A
152 153anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
194 201anti-parallel
Strand 3
B
230 233parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
C
194 201parallel
Strand 3
C
237 244anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
324 325anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
158 162anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
146 148anti-parallel
Strand 3
B
151 153anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
238 244anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
323 325anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 134first strand
Strand 2
C
115 122anti-parallel
Strand 3
C
158 162anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 142first strand
Strand 2
C
145 148anti-parallel
Strand 3
C
151 152anti-parallel
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