Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KDY entry

There are 4 chains in PDB entry 3KDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11GLY 151
A
 ASP 155ARG 539
B
 VAL 11GLY 151
B
 ASP 155ARG 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3KDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 30Right-handed alpha
Helix 2
2
A
38 58Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
102 119Right-handed alpha
Helix 6
6
A
125 138Right-handed alpha
Helix 7
7
A
155 167Right-handed alpha
Helix 8
8
A
181 187Right-handed alpha
Helix 9
9
A
198 205Right-handed alpha
Helix 10
10
A
207 239Right-handed alpha
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
248 253Right-handed alpha
Helix 13
13
A
257 271Right-handed alpha
Helix 14
14
A
279 291Right-handed alpha
Helix 15
15
A
307 312Right-handed alpha
Helix 16
16
A
312 336Right-handed alpha
Helix 17
17
A
358 388Right-handed alpha
Helix 18
18
A
396 400Right-handed 310
Helix 19
19
A
413 426Right-handed alpha
Helix 20
20
A
447 478Right-handed alpha
Helix 21
21
A
487 499Right-handed alpha
Helix 22
22
A
510 522Right-handed alpha
Helix 23
23
A
524 534Right-handed alpha
Helix 24
24
B
21 30Right-handed alpha
Helix 25
25
B
38 57Right-handed alpha
Helix 26
26
B
69 73Right-handed 310
Helix 27
27
B
81 93Right-handed alpha
Helix 28
28
B
102 118Right-handed alpha
Helix 29
29
B
125 139Right-handed alpha
Helix 30
30
B
155 167Right-handed alpha
Helix 31
31
B
181 189Right-handed alpha
Helix 32
32
B
198 205Right-handed alpha
Helix 33
33
B
207 239Right-handed alpha
Helix 34
34
B
243 251Right-handed 310
Helix 35
35
B
257 271Right-handed alpha
Helix 36
36
B
279 291Right-handed alpha
Helix 37
37
B
307 311Right-handed 310
Helix 38
38
B
312 336Right-handed alpha
Helix 39
39
B
358 388Right-handed alpha
Helix 40
40
B
396 400Right-handed 310
Helix 41
41
B
410 426Right-handed alpha
Helix 42
42
B
447 481Right-handed alpha
Helix 43
43
B
482 486Right-handed 310
Helix 44
44
B
487 499Right-handed alpha
Helix 45
45
B
510 523Right-handed alpha
Helix 46
46
B
524 534Right-handed alpha
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There are 8 sheets in PDB entry 3KDY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
35 36parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
145 147anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
177 180anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
B
75 77anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
35 36parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
145 147anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
177 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il