Analysis of interatomic Contacts of Structural Units in PDB entry:
3KE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KE6 entry

There are 2 chains in PDB entry 3KE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -7MET 536
B
 VAL 0MET 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3KE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
216 236Right-handed alpha
Helix 2
2
A
239 251Right-handed alpha
Helix 3
3
A
252 254Right-handed 310
Helix 4
4
A
337 353Right-handed alpha
Helix 5
5
A
366 382Right-handed alpha
Helix 6
6
A
412 429Right-handed alpha
Helix 7
7
A
431 453Right-handed alpha
Helix 8
8
A
497 503Right-handed alpha
Helix 9
9
B
216 236Right-handed alpha
Helix 10
10
B
239 251Right-handed alpha
Helix 11
11
B
252 254Right-handed 310
Helix 12
12
B
328 331Right-handed 310
Helix 13
13
B
337 353Right-handed alpha
Helix 14
14
B
366 384Right-handed alpha
Helix 15
15
B
412 429Right-handed alpha
Helix 16
16
B
431 452Right-handed alpha
Helix 17
17
B
497 503Right-handed alpha
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There are 8 sheets in PDB entry 3KE6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
526 528anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
285 287anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
389 396anti-parallel
Strand 5
A
176 183anti-parallel
Strand 6
A
530 531parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 200first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
273 279anti-parallel
Strand 5
A
313 316anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 407first strand
Strand 2
A
462 468anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
516 524anti-parallel
Strand 5
A
507 513anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
526 528anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
285 287anti-parallel
Strand 3
B
322 326anti-parallel
Strand 4
B
389 396anti-parallel
Strand 5
B
176 183anti-parallel
Strand 6
B
530 531parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
204 211anti-parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
273 279anti-parallel
Strand 5
B
313 316anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 407first strand
Strand 2
B
462 468anti-parallel
Strand 3
B
473 480anti-parallel
Strand 4
B
516 524anti-parallel
Strand 5
B
507 513anti-parallel
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