Analysis of interatomic Contacts of Structural Units in PDB entry:
3KEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KEE entry

There are 8 chains in PDB entry 3KEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ARG 180
E
 LYS 20LEU 31
B
 ILE 3ARG 180
F
 LYS 20LEU 31
C
 ILE 3ARG 180
G
 LYS 20LEU 31
D
 ILE 3ARG 180
H
 LYS 20LEU 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3KEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
56 60Right-handed alpha
Helix 3
3
A
78 80Right-handed 310
Helix 4
4
A
132 136Right-handed alpha
Helix 5
5
A
172 179Right-handed alpha
Helix 6
6
B
12 23Right-handed alpha
Helix 7
7
B
56 60Right-handed alpha
Helix 8
8
B
132 136Right-handed alpha
Helix 9
9
B
172 179Right-handed alpha
Helix 10
10
C
12 23Right-handed alpha
Helix 11
11
C
56 60Right-handed alpha
Helix 12
12
C
131 135Right-handed 310
Helix 13
13
C
172 179Right-handed alpha
Helix 14
14
D
12 23Right-handed alpha
Helix 15
15
D
55 60Right-handed alpha
Helix 16
16
D
132 136Right-handed alpha
Helix 17
17
D
172 179Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3KEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
E
22 30anti-parallel
Strand 3
A
63 64parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
E
22 30anti-parallel
Strand 3
A
33 37anti-parallel
Strand 4
A
42 48anti-parallel
Strand 5
A
51 55anti-parallel
Strand 6
A
82 86anti-parallel
Strand 7
A
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
123 131anti-parallel
Strand 4
A
163 171anti-parallel
Strand 5
A
150 160anti-parallel
Strand 6
A
142 144anti-parallel
Strand 7
A
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
F
22 30anti-parallel
Strand 3
B
63 64parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
F
22 30anti-parallel
Strand 3
B
33 37anti-parallel
Strand 4
B
42 48anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
82 86anti-parallel
Strand 7
B
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
113 118anti-parallel
Strand 3
B
123 131anti-parallel
Strand 4
B
163 171anti-parallel
Strand 5
B
150 160anti-parallel
Strand 6
B
142 144anti-parallel
Strand 7
B
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
G
24 30anti-parallel
Strand 3
C
33 37anti-parallel
Strand 4
C
42 48anti-parallel
Strand 5
C
51 55anti-parallel
Strand 6
C
82 86anti-parallel
Strand 7
C
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
69 71anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 107first strand
Strand 2
C
113 120anti-parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
163 171anti-parallel
Strand 5
C
150 160anti-parallel
Strand 6
C
142 144anti-parallel
Strand 7
C
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
H
22 30anti-parallel
Strand 3
D
63 64parallel
Back to list of sheets
Back to top of page

There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
H
22 30anti-parallel
Strand 3
D
33 37anti-parallel
Strand 4
D
42 48anti-parallel
Strand 5
D
51 54anti-parallel
Strand 6
D
82 86anti-parallel
Strand 7
D
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 107first strand
Strand 2
D
113 118anti-parallel
Strand 3
D
123 131anti-parallel
Strand 4
D
163 171anti-parallel
Strand 5
D
150 159anti-parallel
Strand 6
D
142 144anti-parallel
Strand 7
D
103 107anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il