Analysis of interatomic Contacts of Structural Units in PDB entry:
3KF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KF6 entry

There are 2 chains in PDB entry 3KF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16HIS 154
B
 PRO 498ASP 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3KF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
87 95Right-handed alpha
Helix 3
3
A
130 154Right-handed alpha
Helix 4
4
B
508 515Right-handed 310
Helix 5
5
B
587 601Right-handed alpha
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There are 3 sheets in PDB entry 3KF6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
45 47anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 62first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
117 126parallel
Strand 5
A
102 110anti-parallel
Strand 6
A
49 62anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 506first strand
Strand 2
B
520 531parallel
Strand 3
B
562 571anti-parallel
Strand 4
B
574 582anti-parallel
Strand 5
B
542 547parallel
Strand 6
B
534 539anti-parallel
Strand 7
B
520 531anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il