Analysis of interatomic Contacts of Structural Units in PDB entry:
3KF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KF8 entry

There are 4 chains in PDB entry 3KF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7PRO 214
B
 SER 2PHE 122
C
 ASN 20PRO 212
D
 SER 1ASN 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3KF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 20Right-handed 310
Helix 2
2
A
34 40Right-handed 310
Helix 3
3
A
50 56Right-handed alpha
Helix 4
4
A
60 65Right-handed alpha
Helix 5
5
A
66 71Right-handed 310
Helix 6
6
A
129 134Right-handed alpha
Helix 7
7
A
185 204Right-handed alpha
Helix 8
8
B
7 9Right-handed 310
Helix 9
9
B
10 15Right-handed alpha
Helix 10
10
B
37 39Right-handed 310
Helix 11
11
B
47 51Right-handed 310
Helix 12
12
B
70 75Right-handed 310
Helix 13
13
B
100 104Right-handed 310
Helix 14
14
B
105 115Right-handed alpha
Helix 15
15
C
34 40Right-handed 310
Helix 16
16
C
50 56Right-handed alpha
Helix 17
17
C
60 65Right-handed alpha
Helix 18
18
C
66 71Right-handed 310
Helix 19
19
C
129 135Right-handed alpha
Helix 20
20
C
185 204Right-handed alpha
Helix 21
21
D
7 9Right-handed 310
Helix 22
22
D
10 15Right-handed alpha
Helix 23
23
D
70 75Right-handed 310
Helix 24
24
D
100 104Right-handed 310
Helix 25
25
D
105 117Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3KF8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
30 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
84 97parallel
Strand 3
A
147 156anti-parallel
Strand 4
A
169 180anti-parallel
Strand 5
A
122 128parallel
Strand 6
A
108 114anti-parallel
Strand 7
A
84 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
24 36parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
58 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
24 36parallel
Strand 3
B
79 86anti-parallel
Strand 4
B
91 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 25first strand
Strand 2
C
30 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
84 98parallel
Strand 3
C
147 156anti-parallel
Strand 4
C
169 180anti-parallel
Strand 5
C
122 128parallel
Strand 6
C
107 114anti-parallel
Strand 7
C
84 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
80 82anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
24 36parallel
Strand 3
D
41 46anti-parallel
Strand 4
D
58 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
24 36parallel
Strand 3
D
79 86anti-parallel
Strand 4
D
91 98anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il