Analysis of interatomic Contacts of Structural Units in PDB entry:
3KG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KG6 entry

There are 4 chains in PDB entry 3KG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1685	GLU 1967
B	SER 1684	GLU 1967
C	ASN 1685	GLU 1967
D	ASN 1685	THR 1966

There are 32 helices in PDB entry 3KG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1714	1718	Right-handed 310
Helix 2	2	A	1729	1745	Right-handed alpha
Helix 3	3	A	1823	1831	Right-handed alpha
Helix 4	4	A	1836	1848	Right-handed alpha
Helix 5	5	A	1853	1856	Right-handed 310
Helix 6	6	A	1875	1885	Right-handed 310
Helix 7	7	A	1888	1897	Right-handed alpha
Helix 8	8	A	1898	1902	Right-handed 310
Helix 9	9	B	1714	1718	Right-handed 310
Helix 10	10	B	1729	1745	Right-handed alpha
Helix 11	11	B	1823	1831	Right-handed alpha
Helix 12	12	B	1836	1848	Right-handed alpha
Helix 13	13	B	1853	1856	Right-handed 310
Helix 14	14	B	1875	1885	Right-handed 310
Helix 15	15	B	1888	1897	Right-handed alpha
Helix 16	16	B	1898	1902	Right-handed 310
Helix 17	17	C	1714	1718	Right-handed 310
Helix 18	18	C	1729	1745	Right-handed alpha
Helix 19	19	C	1823	1831	Right-handed alpha
Helix 20	20	C	1836	1848	Right-handed alpha
Helix 21	21	C	1853	1856	Right-handed 310
Helix 22	22	C	1875	1885	Right-handed 310
Helix 23	23	C	1888	1897	Right-handed alpha
Helix 24	24	C	1898	1902	Right-handed 310
Helix 25	25	D	1714	1718	Right-handed 310
Helix 26	26	D	1729	1745	Right-handed alpha
Helix 27	27	D	1823	1831	Right-handed alpha
Helix 28	28	D	1836	1848	Right-handed alpha
Helix 29	29	D	1853	1856	Right-handed 310
Helix 30	30	D	1875	1885	Right-handed 310
Helix 31	31	D	1888	1897	Right-handed alpha
Helix 32	32	D	1898	1903	Right-handed alpha

There are 8 sheets in PDB entry 3KG6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1692	1693	first strand
Strand 2	A	1702	1709	anti-parallel
Strand 3	A	1770	1779	anti-parallel
Strand 4	A	1783	1791	anti-parallel
Strand 5	A	1802	1813	anti-parallel
Strand 6	A	1750	1758	anti-parallel
Strand 7	A	1912	1922	anti-parallel
Strand 8	A	1954	1965	anti-parallel
Strand 9	A	1942	1948	anti-parallel
Strand 10	A	1931	1936	anti-parallel
Strand 11	A	1867	1872	anti-parallel
Strand 12	A	1858	1863	anti-parallel
Strand 13	A	1833	1835	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1763	1764	first strand
Strand 2	A	1725	1727	anti-parallel
Strand 3	A	1720	1722	anti-parallel
Strand 4	A	1849	1851	anti-parallel

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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1692	1693	first strand
Strand 2	B	1702	1709	anti-parallel
Strand 3	B	1770	1778	anti-parallel
Strand 4	B	1784	1791	anti-parallel
Strand 5	B	1802	1813	anti-parallel
Strand 6	B	1750	1758	anti-parallel
Strand 7	B	1911	1922	anti-parallel
Strand 8	B	1954	1966	anti-parallel
Strand 9	B	1942	1948	anti-parallel
Strand 10	B	1931	1936	anti-parallel
Strand 11	B	1867	1872	anti-parallel
Strand 12	B	1858	1863	anti-parallel
Strand 13	B	1833	1835	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1725	1726	first strand
Strand 2	B	1720	1722	anti-parallel
Strand 3	B	1849	1851	anti-parallel

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There are 13 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1692	1693	first strand
Strand 2	C	1702	1709	anti-parallel
Strand 3	C	1770	1779	anti-parallel
Strand 4	C	1783	1791	anti-parallel
Strand 5	C	1802	1813	anti-parallel
Strand 6	C	1750	1758	anti-parallel
Strand 7	C	1911	1922	anti-parallel
Strand 8	C	1954	1966	anti-parallel
Strand 9	C	1942	1948	anti-parallel
Strand 10	C	1931	1936	anti-parallel
Strand 11	C	1867	1872	anti-parallel
Strand 12	C	1858	1863	anti-parallel
Strand 13	C	1833	1835	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1763	1764	first strand
Strand 2	C	1725	1727	anti-parallel
Strand 3	C	1720	1722	anti-parallel
Strand 4	C	1849	1851	anti-parallel

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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1692	1693	first strand
Strand 2	D	1702	1709	anti-parallel
Strand 3	D	1770	1778	anti-parallel
Strand 4	D	1784	1791	anti-parallel
Strand 5	D	1802	1813	anti-parallel
Strand 6	D	1750	1758	anti-parallel
Strand 7	D	1912	1922	anti-parallel
Strand 8	D	1954	1965	anti-parallel
Strand 9	D	1942	1948	anti-parallel
Strand 10	D	1931	1936	anti-parallel
Strand 11	D	1867	1872	anti-parallel
Strand 12	D	1858	1863	anti-parallel
Strand 13	D	1833	1835	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1763	1764	first strand
Strand 2	D	1725	1727	anti-parallel
Strand 3	D	1720	1722	anti-parallel
Strand 4	D	1849	1851	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KG6