Analysis of interatomic Contacts of Structural Units in PDB entry:
3KHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KHJ entry

There are 8 chains in PDB entry 3KHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	SER 379
B	THR 3	THR 378
C	THR 3	SER 379
D	MET 1	THR 378
E	GLY 2	SER 379
F	THR 3	THR 378
G	THR 3	SER 379
H	THR 3	THR 378

There are100 helices in PDB entry 3KHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	13	Right-handed 310
Helix 2	2	A	25	29	Right-handed 310
Helix 3	3	A	55	65	Right-handed alpha
Helix 4	4	A	76	90	Right-handed alpha
Helix 5	5	A	145	155	Right-handed alpha
Helix 6	6	A	169	183	Right-handed alpha
Helix 7	7	A	194	204	Right-handed alpha
Helix 8	8	A	220	225	Right-handed alpha
Helix 9	9	A	230	243	Right-handed alpha
Helix 10	10	A	257	268	Right-handed alpha
Helix 11	11	A	340	359	Right-handed alpha
Helix 12	12	A	363	371	Right-handed alpha
Helix 13	13	B	11	13	Right-handed 310
Helix 14	14	B	25	29	Right-handed 310
Helix 15	15	B	55	65	Right-handed alpha
Helix 16	16	B	76	88	Right-handed alpha
Helix 17	17	B	145	155	Right-handed alpha
Helix 18	18	B	169	183	Right-handed alpha
Helix 19	19	B	194	204	Right-handed alpha
Helix 20	20	B	220	225	Right-handed alpha
Helix 21	21	B	230	243	Right-handed alpha
Helix 22	22	B	257	267	Right-handed alpha
Helix 23	23	B	275	280	Right-handed alpha
Helix 24	24	B	304	309	Right-handed alpha
Helix 25	25	B	340	359	Right-handed alpha
Helix 26	26	B	363	371	Right-handed alpha
Helix 27	27	C	11	13	Right-handed 310
Helix 28	28	C	55	65	Right-handed alpha
Helix 29	29	C	76	89	Right-handed alpha
Helix 30	30	C	145	155	Right-handed alpha
Helix 31	31	C	169	183	Right-handed alpha
Helix 32	32	C	194	204	Right-handed alpha
Helix 33	33	C	220	225	Right-handed alpha
Helix 34	34	C	230	246	Right-handed alpha
Helix 35	35	C	257	267	Right-handed alpha
Helix 36	36	C	275	279	Right-handed 310
Helix 37	37	C	340	359	Right-handed alpha
Helix 38	38	C	363	371	Right-handed alpha
Helix 39	39	D	11	13	Right-handed 310
Helix 40	40	D	25	29	Right-handed 310
Helix 41	41	D	55	65	Right-handed alpha
Helix 42	42	D	76	90	Right-handed alpha
Helix 43	43	D	145	155	Right-handed alpha
Helix 44	44	D	169	183	Right-handed alpha
Helix 45	45	D	194	204	Right-handed alpha
Helix 46	46	D	220	225	Right-handed alpha
Helix 47	47	D	230	243	Right-handed alpha
Helix 48	48	D	257	268	Right-handed alpha
Helix 49	49	D	304	310	Right-handed alpha
Helix 50	50	D	340	359	Right-handed alpha
Helix 51	51	D	363	371	Right-handed alpha
Helix 52	52	E	11	13	Right-handed 310
Helix 53	53	E	25	29	Right-handed 310
Helix 54	54	E	55	66	Right-handed alpha
Helix 55	55	E	76	89	Right-handed alpha
Helix 56	56	E	146	156	Right-handed alpha
Helix 57	57	E	169	183	Right-handed alpha
Helix 58	58	E	194	204	Right-handed alpha
Helix 59	59	E	230	243	Right-handed alpha
Helix 60	60	E	244	246	Right-handed 310
Helix 61	61	E	257	267	Right-handed alpha
Helix 62	62	E	340	359	Right-handed alpha
Helix 63	63	E	363	371	Right-handed alpha
Helix 64	64	F	11	13	Right-handed 310
Helix 65	65	F	25	29	Right-handed 310
Helix 66	66	F	55	65	Right-handed alpha
Helix 67	67	F	76	89	Right-handed alpha
Helix 68	68	F	145	154	Right-handed alpha
Helix 69	69	F	169	183	Right-handed alpha
Helix 70	70	F	194	204	Right-handed alpha
Helix 71	71	F	220	225	Right-handed alpha
Helix 72	72	F	230	243	Right-handed alpha
Helix 73	73	F	257	267	Right-handed alpha
Helix 74	74	F	275	279	Right-handed 310
Helix 75	75	F	340	359	Right-handed alpha
Helix 76	76	F	363	371	Right-handed alpha
Helix 77	77	G	55	64	Right-handed alpha
Helix 78	78	G	76	92	Right-handed alpha
Helix 79	79	G	145	156	Right-handed alpha
Helix 80	80	G	169	181	Right-handed alpha
Helix 81	81	G	194	204	Right-handed alpha
Helix 82	82	G	230	240	Right-handed alpha
Helix 83	83	G	257	268	Right-handed alpha
Helix 84	84	G	275	279	Right-handed 310
Helix 85	85	G	340	360	Right-handed alpha
Helix 86	86	G	363	370	Right-handed alpha
Helix 87	87	H	11	13	Right-handed 310
Helix 88	88	H	25	29	Right-handed 310
Helix 89	89	H	56	64	Right-handed alpha
Helix 90	90	H	76	89	Right-handed alpha
Helix 91	91	H	147	152	Right-handed alpha
Helix 92	92	H	169	181	Right-handed alpha
Helix 93	93	H	194	204	Right-handed alpha
Helix 94	94	H	220	225	Right-handed alpha
Helix 95	95	H	230	239	Right-handed alpha
Helix 96	96	H	257	268	Right-handed alpha
Helix 97	97	H	275	279	Right-handed 310
Helix 98	98	H	304	310	Right-handed alpha
Helix 99	99	H	340	359	Right-handed alpha
Helix 100	100	H	363	371	Right-handed alpha

There are 32 sheets in PDB entry 3KHJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	D	373	375	parallel
Strand 3	D	15	17	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	373	375	anti-parallel
Strand 3	B	5	8	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	40	41	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	68	71	parallel
Strand 3	A	138	141	parallel
Strand 4	A	159	162	parallel
Strand 5	A	186	192	parallel
Strand 6	A	208	211	parallel
Strand 7	A	249	252	parallel
Strand 8	A	271	274	parallel
Strand 9	A	45	47	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	294	298	anti-parallel
Strand 3	A	335	336	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	373	376	anti-parallel
Strand 3	C	5	9	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	40	41	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	68	71	parallel
Strand 3	B	137	141	parallel
Strand 4	B	159	163	parallel
Strand 5	B	186	192	parallel
Strand 6	B	208	211	parallel
Strand 7	B	249	252	parallel
Strand 8	B	271	274	parallel
Strand 9	B	45	47	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	294	300	anti-parallel
Strand 3	B	332	336	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	373	376	anti-parallel
Strand 3	D	5	9	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	39	41	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	68	71	parallel
Strand 3	C	138	141	parallel
Strand 4	C	159	163	parallel
Strand 5	C	186	192	parallel
Strand 6	C	208	211	parallel
Strand 7	C	249	252	parallel
Strand 8	C	271	274	parallel
Strand 9	C	45	47	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	295	298	anti-parallel
Strand 3	C	334	336	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	40	41	anti-parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	68	71	parallel
Strand 3	D	138	141	parallel
Strand 4	D	159	162	parallel
Strand 5	D	186	192	parallel
Strand 6	D	208	211	parallel
Strand 7	D	249	252	parallel
Strand 8	D	271	274	parallel
Strand 9	D	45	47	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	291	first strand
Strand 2	D	294	300	anti-parallel
Strand 3	D	332	336	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	H	373	375	parallel
Strand 3	H	15	17	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	373	375	anti-parallel
Strand 3	F	5	8	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	40	41	anti-parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	68	71	parallel
Strand 3	E	138	141	parallel
Strand 4	E	159	162	parallel
Strand 5	E	186	192	parallel
Strand 6	E	208	211	parallel
Strand 7	E	249	252	parallel
Strand 8	E	271	274	parallel
Strand 9	E	45	47	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	291	first strand
Strand 2	E	294	297	anti-parallel
Strand 3	E	335	336	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	373	375	anti-parallel
Strand 3	G	5	8	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	39	41	anti-parallel

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There are 9 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	68	71	parallel
Strand 3	F	138	141	parallel
Strand 4	F	159	163	parallel
Strand 5	F	186	192	parallel
Strand 6	F	208	211	parallel
Strand 7	F	249	252	parallel
Strand 8	F	271	274	parallel
Strand 9	F	45	47	parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	291	first strand
Strand 2	F	294	298	anti-parallel
Strand 3	F	335	336	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	373	376	anti-parallel
Strand 3	H	5	9	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	40	41	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	68	71	parallel
Strand 3	G	137	141	parallel
Strand 4	G	159	162	parallel
Strand 5	G	187	192	parallel
Strand 6	G	208	211	parallel
Strand 7	G	249	252	parallel
Strand 8	G	271	274	parallel
Strand 9	G	45	47	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	287	291	first strand
Strand 2	G	294	298	anti-parallel
Strand 3	G	334	336	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	40	41	anti-parallel

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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	68	71	parallel
Strand 3	H	138	141	parallel
Strand 4	H	159	163	parallel
Strand 5	H	186	192	parallel
Strand 6	H	208	211	parallel
Strand 7	H	249	252	parallel
Strand 8	H	271	274	parallel
Strand 9	H	45	47	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	291	first strand
Strand 2	H	294	300	anti-parallel
Strand 3	H	332	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KHJ