Analysis of interatomic Contacts of Structural Units in PDB entry:
3KHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KHM entry

There is 1 chain in PDB entry 3KHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24LEU 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3KHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 51Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
82 84Right-handed 310
Helix 4
4
A
85 91Right-handed alpha
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
106 111Right-handed alpha
Helix 7
7
A
114 118Right-handed 310
Helix 8
8
A
119 134Right-handed alpha
Helix 9
9
A
135 139Right-handed 310
Helix 10
10
A
141 158Right-handed alpha
Helix 11
11
A
167 184Right-handed alpha
Helix 12
12
A
185 192Right-handed alpha
Helix 13
13
A
193 204Right-handed alpha
Helix 14
14
A
226 248Right-handed alpha
Helix 15
15
A
260 267Right-handed alpha
Helix 16
16
A
277 309Right-handed alpha
Helix 17
17
A
312 324Right-handed alpha
Helix 18
18
A
331 339Right-handed alpha
Helix 19
19
A
339 353Right-handed alpha
Helix 20
20
A
383 388Right-handed alpha
Helix 21
21
A
417 421Right-handed 310
Helix 22
22
A
424 442Right-handed alpha
Helix 23
23
A
466 468Right-handed 310
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There are 4 sheets in PDB entry 3KHM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
443 447anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
372 374anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il