Analysis of interatomic Contacts of Structural Units in PDB entry:
3KHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KHW entry

There are 2 chains in PDB entry 3KHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 541SER 741
B
 GLY 541SER 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3KHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
541 556Right-handed alpha
Helix 2
2
A
556 567Right-handed alpha
Helix 3
3
A
567 573Right-handed alpha
Helix 4
4
A
574 576Right-handed 310
Helix 5
5
A
577 583Right-handed alpha
Helix 6
6
A
588 606Right-handed alpha
Helix 7
7
A
611 619Right-handed alpha
Helix 8
8
A
620 624Right-handed 310
Helix 9
9
A
701 705Right-handed 310
Helix 10
10
A
711 713Right-handed 310
Helix 11
11
B
541 556Right-handed alpha
Helix 12
12
B
556 567Right-handed alpha
Helix 13
13
B
567 573Right-handed alpha
Helix 14
14
B
574 576Right-handed 310
Helix 15
15
B
577 583Right-handed alpha
Helix 16
16
B
588 606Right-handed alpha
Helix 17
17
B
611 619Right-handed alpha
Helix 18
18
B
620 623Right-handed 310
Helix 19
19
B
701 705Right-handed 310
Helix 20
20
B
709 713Right-handed 310
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There are 6 sheets in PDB entry 3KHW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
644 648anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 658first strand
Strand 2
A
664 667anti-parallel
Strand 3
A
670 674anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 699first strand
Strand 2
A
730 736anti-parallel
Strand 3
A
721 727anti-parallel
Strand 4
A
708 709parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
644 648anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 659first strand
Strand 2
B
664 667anti-parallel
Strand 3
B
670 674anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
694 699first strand
Strand 2
B
730 736anti-parallel
Strand 3
B
721 727anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il