Analysis of interatomic Contacts of Structural Units in PDB entry:
3KI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KI8 entry

There are 4 chains in PDB entry 3KI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ILE 145
A
 PHE 147ARG 262
B
 VAL 2ILE 145
B
 PHE 147ARG 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3KI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
52 58Right-handed alpha
Helix 3
3
A
66 80Right-handed alpha
Helix 4
4
A
119 124Right-handed alpha
Helix 5
5
A
145 150Right-handed 310
Helix 6
6
A
151 161Right-handed alpha
Helix 7
7
A
176 189Right-handed alpha
Helix 8
8
A
236 242Right-handed alpha
Helix 9
9
A
256 260Right-handed 310
Helix 10
10
B
15 33Right-handed alpha
Helix 11
11
B
52 58Right-handed alpha
Helix 12
12
B
66 80Right-handed alpha
Helix 13
13
B
117 123Right-handed 310
Helix 14
14
B
145 150Right-handed 310
Helix 15
15
B
151 161Right-handed alpha
Helix 16
16
B
176 189Right-handed alpha
Helix 17
17
B
236 242Right-handed alpha
Helix 18
18
B
256 260Right-handed 310
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There are 8 sheets in PDB entry 3KI8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
94 103anti-parallel
Strand 3
A
82 91anti-parallel
Strand 4
A
37 39parallel
Strand 5
A
3 8parallel
Strand 6
A
229 234anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
165 169parallel
Strand 4
A
191 195parallel
Strand 5
A
211 213anti-parallel
Strand 6
A
219 222anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
204 205anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
249 250anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 112first strand
Strand 2
B
94 103anti-parallel
Strand 3
B
82 91anti-parallel
Strand 4
B
37 39parallel
Strand 5
B
3 8parallel
Strand 6
B
229 234anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
140 143anti-parallel
Strand 3
B
165 170parallel
Strand 4
B
191 196parallel
Strand 5
B
211 213anti-parallel
Strand 6
B
219 222anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
204 205anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
249 250anti-parallel
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