Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KJE entry

There is 1 chain in PDB entry 3KJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3KJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 25Right-handed alpha
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
58 61Right-handed 310
Helix 5
5
A
62 71Right-handed alpha
Helix 6
6
A
82 89Right-handed 310
Helix 7
7
A
113 130Right-handed alpha
Helix 8
8
A
147 152Right-handed alpha
Helix 9
9
A
164 182Right-handed alpha
Helix 10
10
A
195 206Right-handed alpha
Helix 11
11
A
236 253Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3KJE.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
31 36parallel
Strand 4
A
134 139parallel
Strand 5
A
2 7parallel
Strand 6
A
156 161parallel
Strand 7
A
186 193parallel
Strand 8
A
211 216parallel
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