Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KJI entry

There are 2 chains in PDB entry 3KJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 254
B
 MET 1GLY 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3KJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
58 61Right-handed 310
Helix 5
5
A
62 71Right-handed alpha
Helix 6
6
A
82 89Right-handed 310
Helix 7
7
A
113 130Right-handed alpha
Helix 8
8
A
147 152Right-handed alpha
Helix 9
9
A
164 182Right-handed alpha
Helix 10
10
A
195 206Right-handed alpha
Helix 11
11
A
207 209Right-handed 310
Helix 12
12
A
219 226Right-handed alpha
Helix 13
13
A
238 254Right-handed alpha
Helix 14
14
B
12 25Right-handed alpha
Helix 15
15
B
41 46Right-handed alpha
Helix 16
16
B
49 56Right-handed alpha
Helix 17
17
B
58 61Right-handed 310
Helix 18
18
B
62 71Right-handed alpha
Helix 19
19
B
85 89Right-handed 310
Helix 20
20
B
115 130Right-handed alpha
Helix 21
21
B
164 181Right-handed alpha
Helix 22
22
B
195 206Right-handed alpha
Helix 23
23
B
207 209Right-handed 310
Helix 24
24
B
218 227Right-handed alpha
Helix 25
25
B
237 254Right-handed alpha
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There are 2 sheets in PDB entry 3KJI. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
31 36parallel
Strand 4
A
134 139parallel
Strand 5
A
2 6parallel
Strand 6
A
156 161parallel
Strand 7
A
186 193parallel
Strand 8
A
211 216parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
97 101anti-parallel
Strand 3
B
31 36parallel
Strand 4
B
134 139parallel
Strand 5
B
2 6parallel
Strand 6
B
156 161parallel
Strand 7
B
186 193parallel
Strand 8
B
211 216parallel
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