Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KJV entry

There are 4 chains in PDB entry 3KJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ILE 556
B
 PRO 4LYS 431
P
 G 805 C 821
T
 G 703 G 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3KJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 43Right-handed alpha
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
154 168Right-handed alpha
Helix 8
8
A
168 175Right-handed alpha
Helix 9
9
A
194 199Right-handed alpha
Helix 10
10
A
200 212Right-handed alpha
Helix 11
11
A
253 268Right-handed alpha
Helix 12
12
A
278 282Right-handed 310
Helix 13
13
A
296 312Right-handed alpha
Helix 14
14
A
363 383Right-handed alpha
Helix 15
15
A
394 405Right-handed alpha
Helix 16
16
A
473 489Right-handed alpha
Helix 17
17
A
499 508Right-handed alpha
Helix 18
18
A
515 528Right-handed alpha
Helix 19
19
A
544 552Right-handed alpha
Helix 20
20
B
27 44Right-handed alpha
Helix 21
21
B
77 82Right-handed alpha
Helix 22
22
B
99 103Right-handed 310
Helix 23
23
B
114 118Right-handed 310
Helix 24
24
B
121 126Right-handed alpha
Helix 25
25
B
134 138Right-handed 310
Helix 26
26
B
155 175Right-handed alpha
Helix 27
27
B
196 209Right-handed alpha
Helix 28
28
B
235 239Right-handed 310
Helix 29
29
B
254 269Right-handed alpha
Helix 30
30
B
298 310Right-handed alpha
Helix 31
31
B
363 384Right-handed alpha
Helix 32
32
B
394 402Right-handed alpha
Helix 33
33
B
422 428Right-handed alpha
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There are 13 sheets in PDB entry 3KJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
130 131anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
73 75anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
220 221anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
326 328anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
337 338anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
492 497parallel
Strand 3
A
530 535parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
453 456anti-parallel
Strand 3
A
466 467anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
72 75anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
179 183anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
292 293anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 355first strand
Strand 2
B
336 344anti-parallel
Strand 3
B
326 331anti-parallel
Strand 4
B
388 392parallel
Strand 5
B
413 417parallel
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