Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KJX entry

There are 4 chains in PDB entry 3KJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ARG 340
B
 PRO 8ARG 340
C
 PRO 8ARG 340
D
 LYS 6ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 3KJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
22 30Right-handed alpha
Helix 3
3
A
36 51Right-handed alpha
Helix 4
4
A
80 93Right-handed alpha
Helix 5
5
A
107 120Right-handed alpha
Helix 6
6
A
134 144Right-handed alpha
Helix 7
7
A
166 182Right-handed alpha
Helix 8
8
A
196 213Right-handed alpha
Helix 9
9
A
228 243Right-handed alpha
Helix 10
10
A
253 267Right-handed alpha
Helix 11
11
A
283 289Right-handed 310
Helix 12
12
A
299 317Right-handed alpha
Helix 13
13
B
10 19Right-handed alpha
Helix 14
14
B
21 30Right-handed alpha
Helix 15
15
B
36 51Right-handed alpha
Helix 16
16
B
80 93Right-handed alpha
Helix 17
17
B
107 120Right-handed alpha
Helix 18
18
B
134 144Right-handed alpha
Helix 19
19
B
166 181Right-handed alpha
Helix 20
20
B
196 212Right-handed alpha
Helix 21
21
B
228 241Right-handed alpha
Helix 22
22
B
253 267Right-handed alpha
Helix 23
23
B
283 289Right-handed 310
Helix 24
24
B
299 317Right-handed alpha
Helix 25
25
C
10 19Right-handed alpha
Helix 26
26
C
21 29Right-handed alpha
Helix 27
27
C
38 51Right-handed alpha
Helix 28
28
C
80 94Right-handed alpha
Helix 29
29
C
107 120Right-handed alpha
Helix 30
30
C
134 144Right-handed alpha
Helix 31
31
C
166 180Right-handed alpha
Helix 32
32
C
196 212Right-handed alpha
Helix 33
33
C
228 243Right-handed alpha
Helix 34
34
C
253 267Right-handed alpha
Helix 35
35
C
283 289Right-handed 310
Helix 36
36
C
299 317Right-handed alpha
Helix 37
37
D
11 19Right-handed alpha
Helix 38
38
D
21 29Right-handed alpha
Helix 39
39
D
40 51Right-handed alpha
Helix 40
40
D
80 93Right-handed alpha
Helix 41
41
D
107 120Right-handed alpha
Helix 42
42
D
135 143Right-handed alpha
Helix 43
43
D
166 181Right-handed alpha
Helix 44
44
D
196 213Right-handed alpha
Helix 45
45
D
228 243Right-handed alpha
Helix 46
46
D
253 267Right-handed alpha
Helix 47
47
D
283 289Right-handed 310
Helix 48
48
D
299 317Right-handed alpha
Helix 49
49
D
318 321Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 3KJX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
68 73parallel
Strand 3
A
125 129parallel
Strand 4
A
148 153parallel
Strand 5
A
161 165parallel
Strand 6
A
325 328parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
188 190parallel
Strand 3
A
248 251parallel
Strand 4
A
276 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
332 333anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
68 73parallel
Strand 3
B
125 129parallel
Strand 4
B
148 153parallel
Strand 5
B
161 165parallel
Strand 6
B
325 327parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 223first strand
Strand 2
B
186 191parallel
Strand 3
B
248 251parallel
Strand 4
B
276 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
332 333anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 103first strand
Strand 2
C
68 73parallel
Strand 3
C
125 129parallel
Strand 4
C
148 153parallel
Strand 5
C
161 165parallel
Strand 6
C
325 327parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 221first strand
Strand 2
C
186 189parallel
Strand 3
C
248 251parallel
Strand 4
C
276 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
295 296first strand
Strand 2
C
332 333anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 103first strand
Strand 2
D
68 73parallel
Strand 3
D
125 129parallel
Strand 4
D
148 153parallel
Strand 5
D
162 165parallel
Strand 6
D
325 328parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
219 222first strand
Strand 2
D
186 190parallel
Strand 3
D
248 251parallel
Strand 4
D
276 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
295 296first strand
Strand 2
D
332 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il