Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KJY entry

There are 2 chains in PDB entry 3KJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -8ARG 230
B
 LEU -8ARG 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3KJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 36Right-handed alpha
Helix 2
2
A
74 86Right-handed alpha
Helix 3
3
A
98 104Right-handed alpha
Helix 4
4
A
107 118Right-handed alpha
Helix 5
5
A
120 122Right-handed 310
Helix 6
6
A
123 144Right-handed alpha
Helix 7
7
A
146 153Right-handed alpha
Helix 8
8
A
170 192Right-handed alpha
Helix 9
9
A
199 211Right-handed alpha
Helix 10
10
A
212 217Right-handed alpha
Helix 11
11
A
221 229Right-handed alpha
Helix 12
12
B
22 36Right-handed alpha
Helix 13
13
B
74 86Right-handed alpha
Helix 14
14
B
98 103Right-handed 310
Helix 15
15
B
107 117Right-handed alpha
Helix 16
16
B
120 122Right-handed 310
Helix 17
17
B
123 144Right-handed alpha
Helix 18
18
B
146 153Right-handed alpha
Helix 19
19
B
170 192Right-handed alpha
Helix 20
20
B
199 211Right-handed alpha
Helix 21
21
B
212 219Right-handed alpha
Helix 22
22
B
221 229Right-handed alpha
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There are 2 sheets in PDB entry 3KJY. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -4first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
6 11parallel
Strand 4
A
64 67anti-parallel
Strand 5
A
70 72anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-7 -4first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
6 11parallel
Strand 4
B
64 67anti-parallel
Strand 5
B
70 72anti-parallel
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