Analysis of interatomic Contacts of Structural Units in PDB entry:
3KKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KKD entry

There are 3 chains in PDB entry 3KKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 35LEU 237
B
 GLY 32LEU 237
C
 GLY 32LEU 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3KKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 52Right-handed alpha
Helix 2
2
A
53 56Right-handed 310
Helix 3
3
A
57 66Right-handed alpha
Helix 4
4
A
78 119Right-handed alpha
Helix 5
5
A
122 144Right-handed alpha
Helix 6
6
A
145 160Right-handed alpha
Helix 7
7
A
162 187Right-handed alpha
Helix 8
8
A
191 214Right-handed alpha
Helix 9
9
A
215 218Right-handed 310
Helix 10
10
A
219 235Right-handed alpha
Helix 11
11
B
33 52Right-handed alpha
Helix 12
12
B
53 56Right-handed 310
Helix 13
13
B
57 66Right-handed alpha
Helix 14
14
B
68 76Right-handed alpha
Helix 15
15
B
78 119Right-handed alpha
Helix 16
16
B
122 144Right-handed alpha
Helix 17
17
B
145 160Right-handed alpha
Helix 18
18
B
162 187Right-handed alpha
Helix 19
19
B
191 214Right-handed alpha
Helix 20
20
B
219 235Right-handed alpha
Helix 21
21
C
33 52Right-handed alpha
Helix 22
22
C
53 56Right-handed 310
Helix 23
23
C
57 66Right-handed alpha
Helix 24
24
C
68 76Right-handed alpha
Helix 25
25
C
78 119Right-handed alpha
Helix 26
26
C
122 143Right-handed alpha
Helix 27
27
C
145 154Right-handed alpha
Helix 28
28
C
155 156Right-handed 310
Helix 29
29
C
157 161Right-handed 310
Helix 30
30
C
162 170Right-handed alpha
Helix 31
31
C
170 188Right-handed alpha
Helix 32
32
C
191 214Right-handed alpha
Helix 33
33
C
216 235Right-handed alpha
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There are no sheets in PDB entry 3KKD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il