Analysis of interatomic Contacts of Structural Units in PDB entry:
3KKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KKE entry

There are 4 chains in PDB entry 3KKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 63THR 340
B
 ASN 50THR 340
C
 ALA 55PRO 339
D
 THR 63PRO 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3KKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 90Right-handed alpha
Helix 2
2
A
103 115Right-handed alpha
Helix 3
3
A
130 139Right-handed alpha
Helix 4
4
A
160 175Right-handed alpha
Helix 5
5
A
189 206Right-handed alpha
Helix 6
6
A
211 213Right-handed 310
Helix 7
7
A
221 237Right-handed alpha
Helix 8
8
A
251 265Right-handed alpha
Helix 9
9
A
281 287Right-handed alpha
Helix 10
10
A
297 314Right-handed alpha
Helix 11
11
B
50 59Right-handed alpha
Helix 12
12
B
75 90Right-handed alpha
Helix 13
13
B
103 115Right-handed alpha
Helix 14
14
B
130 139Right-handed alpha
Helix 15
15
B
160 175Right-handed alpha
Helix 16
16
B
189 206Right-handed alpha
Helix 17
17
B
211 213Right-handed 310
Helix 18
18
B
221 237Right-handed alpha
Helix 19
19
B
251 265Right-handed alpha
Helix 20
20
B
281 287Right-handed alpha
Helix 21
21
B
297 314Right-handed alpha
Helix 22
22
C
75 90Right-handed alpha
Helix 23
23
C
103 115Right-handed alpha
Helix 24
24
C
130 139Right-handed alpha
Helix 25
25
C
160 176Right-handed alpha
Helix 26
26
C
189 206Right-handed alpha
Helix 27
27
C
211 213Right-handed 310
Helix 28
28
C
221 236Right-handed alpha
Helix 29
29
C
251 266Right-handed alpha
Helix 30
30
C
281 287Right-handed alpha
Helix 31
31
C
297 313Right-handed alpha
Helix 32
32
D
75 90Right-handed alpha
Helix 33
33
D
103 115Right-handed alpha
Helix 34
34
D
130 139Right-handed alpha
Helix 35
35
D
160 175Right-handed alpha
Helix 36
36
D
189 207Right-handed alpha
Helix 37
37
D
221 236Right-handed alpha
Helix 38
38
D
251 266Right-handed alpha
Helix 39
39
D
281 287Right-handed alpha
Helix 40
40
D
297 314Right-handed alpha
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There are 8 sheets in PDB entry 3KKE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
64 68parallel
Strand 3
A
120 123parallel
Strand 4
A
143 146parallel
Strand 5
A
156 159parallel
Strand 6
A
320 323parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
180 184parallel
Strand 3
A
246 249parallel
Strand 4
A
274 278parallel
Strand 5
A
292 295parallel
Strand 6
A
329 331anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
63 67parallel
Strand 3
B
121 123parallel
Strand 4
B
143 146parallel
Strand 5
B
156 159parallel
Strand 6
B
320 323parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
180 184parallel
Strand 3
B
246 249parallel
Strand 4
B
274 278parallel
Strand 5
B
292 295parallel
Strand 6
B
329 331anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 97first strand
Strand 2
C
63 67parallel
Strand 3
C
120 124parallel
Strand 4
C
143 146parallel
Strand 5
C
156 159parallel
Strand 6
C
320 323parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 216first strand
Strand 2
C
180 183parallel
Strand 3
C
246 249parallel
Strand 4
C
274 278parallel
Strand 5
C
292 295parallel
Strand 6
C
329 331anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 97first strand
Strand 2
D
64 67parallel
Strand 3
D
120 124parallel
Strand 4
D
143 146parallel
Strand 5
D
156 159parallel
Strand 6
D
320 323parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
215 217first strand
Strand 2
D
180 184parallel
Strand 3
D
246 249parallel
Strand 4
D
274 278parallel
Strand 5
D
292 295parallel
Strand 6
D
329 331anti-parallel
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