Analysis of interatomic Contacts of Structural Units in PDB entry:
3KKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KKK entry

There are 4 chains in PDB entry 3KKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 231
B
 MET 1LEU 231
C
 THR 2LEU 231
D
 THR 2LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3KKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
31 48Right-handed alpha
Helix 3
3
A
60 75Right-handed alpha
Helix 4
4
A
85 88Right-handed 310
Helix 5
5
A
92 96Right-handed 310
Helix 6
6
A
99 107Right-handed alpha
Helix 7
7
A
108 118Right-handed alpha
Helix 8
8
A
133 141Right-handed 310
Helix 9
9
A
144 148Right-handed 310
Helix 10
10
A
153 168Right-handed alpha
Helix 11
11
A
168 175Right-handed alpha
Helix 12
12
A
184 196Right-handed alpha
Helix 13
13
A
199 206Right-handed alpha
Helix 14
14
B
14 19Right-handed alpha
Helix 15
15
B
31 48Right-handed alpha
Helix 16
16
B
60 74Right-handed alpha
Helix 17
17
B
85 88Right-handed 310
Helix 18
18
B
92 96Right-handed 310
Helix 19
19
B
99 108Right-handed alpha
Helix 20
20
B
108 118Right-handed alpha
Helix 21
21
B
133 141Right-handed 310
Helix 22
22
B
144 148Right-handed 310
Helix 23
23
B
153 168Right-handed alpha
Helix 24
24
B
168 175Right-handed alpha
Helix 25
25
B
184 196Right-handed alpha
Helix 26
26
B
199 206Right-handed alpha
Helix 27
27
C
14 20Right-handed alpha
Helix 28
28
C
31 48Right-handed alpha
Helix 29
29
C
60 75Right-handed alpha
Helix 30
30
C
85 88Right-handed 310
Helix 31
31
C
92 96Right-handed 310
Helix 32
32
C
99 108Right-handed alpha
Helix 33
33
C
108 118Right-handed alpha
Helix 34
34
C
133 141Right-handed 310
Helix 35
35
C
144 148Right-handed 310
Helix 36
36
C
153 168Right-handed alpha
Helix 37
37
C
168 175Right-handed alpha
Helix 38
38
C
184 196Right-handed alpha
Helix 39
39
C
199 206Right-handed alpha
Helix 40
40
D
14 20Right-handed 310
Helix 41
41
D
31 48Right-handed alpha
Helix 42
42
D
60 75Right-handed alpha
Helix 43
43
D
85 88Right-handed 310
Helix 44
44
D
92 96Right-handed 310
Helix 45
45
D
99 108Right-handed alpha
Helix 46
46
D
108 118Right-handed alpha
Helix 47
47
D
133 141Right-handed 310
Helix 48
48
D
144 148Right-handed 310
Helix 49
49
D
153 168Right-handed alpha
Helix 50
50
D
168 175Right-handed alpha
Helix 51
51
D
184 196Right-handed alpha
Helix 52
52
D
199 206Right-handed alpha
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There are 4 sheets in PDB entry 3KKK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
54 57parallel
Strand 3
A
179 183parallel
Strand 4
A
4 10parallel
Strand 5
A
214 218anti-parallel
Strand 6
A
224 229anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
54 57parallel
Strand 3
B
179 183parallel
Strand 4
B
4 10parallel
Strand 5
B
214 218anti-parallel
Strand 6
B
224 229anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
54 57parallel
Strand 3
C
179 183parallel
Strand 4
C
4 10parallel
Strand 5
C
214 218anti-parallel
Strand 6
C
224 229anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
54 57parallel
Strand 3
D
179 183parallel
Strand 4
D
3 10parallel
Strand 5
D
214 219anti-parallel
Strand 6
D
224 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il