Analysis of interatomic Contacts of Structural Units in PDB entry:
3KLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KLJ entry

There is 1 chain in PDB entry 3KLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3KLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 51Right-handed alpha
Helix 4
4
A
54 58Right-handed 310
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
126 141Right-handed alpha
Helix 7
7
A
149 163Right-handed alpha
Helix 8
8
A
181 194Right-handed alpha
Helix 9
9
A
204 207Right-handed 310
Helix 10
10
A
208 215Right-handed alpha
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
A
270 286Right-handed alpha
Helix 13
13
A
349 362Right-handed alpha
Helix 14
14
A
371 377Right-handed alpha
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There are 6 sheets in PDB entry 3KLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
29 32parallel
Strand 3
A
6 9parallel
Strand 4
A
101 104parallel
Strand 5
A
254 256parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
96 98anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
223 225anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
216 219parallel
Strand 3
A
143 146parallel
Strand 4
A
166 169parallel
Strand 5
A
198 200parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
261 263parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
306 311anti-parallel
Strand 3
A
340 347anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
321 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il