Analysis of interatomic Contacts of Structural Units in PDB entry:
3KM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KM5 entry

There are 2 chains in PDB entry 3KM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1155GLY 1333
B
 ALA 1157MET 1332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3KM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1259 1261Right-handed 310
Helix 2
2
B
1259 1261Right-handed 310
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There are 6 sheets in PDB entry 3KM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1161first strand
Strand 2
A
1322 1331anti-parallel
Strand 3
A
1205 1210anti-parallel
Strand 4
A
1188 1191anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1161first strand
Strand 2
A
1322 1331anti-parallel
Strand 3
A
1233 1240anti-parallel
Strand 4
A
1297 1302anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1176 1179first strand
Strand 2
A
1220 1224anti-parallel
Strand 3
A
1309 1315anti-parallel
Strand 4
A
1249 1254anti-parallel
Strand 5
A
1263 1269anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1159 1161first strand
Strand 2
B
1322 1331anti-parallel
Strand 3
B
1205 1210anti-parallel
Strand 4
B
1188 1191anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1159 1161first strand
Strand 2
B
1322 1331anti-parallel
Strand 3
B
1233 1240anti-parallel
Strand 4
B
1297 1302anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1176 1179first strand
Strand 2
B
1220 1224anti-parallel
Strand 3
B
1309 1315anti-parallel
Strand 4
B
1249 1254anti-parallel
Strand 5
B
1263 1269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il