Analysis of interatomic Contacts of Structural Units in PDB entry:
3KMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KMF entry

There are 4 chains in PDB entry 3KMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 141
C
 VAL 201HIS 346
E
 VAL 401ARG 541
G
 VAL 601HIS 746
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3KMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
20 36Right-handed alpha
Helix 3
3
A
37 42Right-handed 310
Helix 4
4
A
52 72Right-handed alpha
Helix 5
5
A
75 80Right-handed alpha
Helix 6
6
A
80 90Right-handed alpha
Helix 7
7
A
96 113Right-handed alpha
Helix 8
8
A
118 137Right-handed alpha
Helix 9
9
C
204 215Right-handed alpha
Helix 10
10
C
216 218Right-handed 310
Helix 11
11
C
219 235Right-handed alpha
Helix 12
12
C
236 246Right-handed 310
Helix 13
13
C
250 256Right-handed alpha
Helix 14
14
C
257 273Right-handed alpha
Helix 15
15
C
277 279Right-handed 310
Helix 16
16
C
280 295Right-handed alpha
Helix 17
17
C
301 319Right-handed alpha
Helix 18
18
C
320 322Right-handed 310
Helix 19
19
C
323 342Right-handed alpha
Helix 20
20
E
403 418Right-handed alpha
Helix 21
21
E
420 436Right-handed alpha
Helix 22
22
E
437 440Right-handed 310
Helix 23
23
E
452 472Right-handed alpha
Helix 24
24
E
475 480Right-handed alpha
Helix 25
25
E
480 490Right-handed alpha
Helix 26
26
E
496 511Right-handed alpha
Helix 27
27
E
518 536Right-handed alpha
Helix 28
28
G
604 616Right-handed alpha
Helix 29
29
G
619 635Right-handed alpha
Helix 30
30
G
636 646Right-handed 310
Helix 31
31
G
650 657Right-handed alpha
Helix 32
32
G
657 676Right-handed alpha
Helix 33
33
G
677 679Right-handed 310
Helix 34
34
G
680 685Right-handed alpha
Helix 35
35
G
685 695Right-handed alpha
Helix 36
36
G
700 719Right-handed alpha
Helix 37
37
G
720 722Right-handed 310
Helix 38
38
G
723 743Right-handed alpha
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There are no sheets in PDB entry 3KMF
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