Analysis of interatomic Contacts of Structural Units in PDB entry:
3KMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KMG entry

There are 4 chains in PDB entry 3KMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 209LEU 476
B
 GLU 685GLN 695
D
 SER 208LEU 476
E
 SER 682PRO 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3KMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
210 226Right-handed alpha
Helix 2
2
A
229 238Right-handed alpha
Helix 3
3
A
251 261Right-handed alpha
Helix 4
4
A
276 302Right-handed alpha
Helix 5
5
A
305 309Right-handed 310
Helix 6
6
A
310 331Right-handed alpha
Helix 7
7
A
342 344Right-handed 310
Helix 8
8
A
350 355Right-handed alpha
Helix 9
9
A
359 363Right-handed 310
Helix 10
10
A
364 376Right-handed alpha
Helix 11
11
A
380 393Right-handed alpha
Helix 12
12
A
402 425Right-handed alpha
Helix 13
13
A
430 437Right-handed alpha
Helix 14
14
A
438 460Right-handed alpha
Helix 15
15
A
466 474Right-handed alpha
Helix 16
16
B
687 695Right-handed alpha
Helix 17
17
D
209 226Right-handed alpha
Helix 18
18
D
229 238Right-handed alpha
Helix 19
19
D
251 260Right-handed alpha
Helix 20
20
D
276 301Right-handed alpha
Helix 21
21
D
305 309Right-handed 310
Helix 22
22
D
310 331Right-handed alpha
Helix 23
23
D
350 356Right-handed alpha
Helix 24
24
D
359 363Right-handed 310
Helix 25
25
D
364 376Right-handed alpha
Helix 26
26
D
380 393Right-handed alpha
Helix 27
27
D
402 425Right-handed alpha
Helix 28
28
D
430 457Right-handed alpha
Helix 29
29
D
466 474Right-handed alpha
Helix 30
30
E
687 697Right-handed alpha
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There are 2 sheets in PDB entry 3KMG. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
346 349parallel
Strand 3
D
338 341anti-parallel
Strand 4
D
334 335anti-parallel
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