Analysis of interatomic Contacts of Structural Units in PDB entry:
3KML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KML entry

There are 17 chains in PDB entry 3KML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 13	ASN 153
B	THR 13	ASN 153
C	THR 13	ASN 153
D	THR 13	ASN 153
E	THR 13	ASN 153
F	THR 13	ASN 153
G	THR 13	ASN 153
H	THR 13	ASN 153
I	THR 13	ASN 153
J	THR 13	ASN 153
K	THR 13	ASN 153
L	THR 13	ASN 153
M	THR 13	ASN 153
N	THR 13	ASN 153
O	THR 13	ASN 153
P	THR 13	ASN 153
Q	THR 13	ASN 153

There are119 helices in PDB entry 3KML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	17	Right-handed 310
Helix 2	2	A	18	37	Right-handed alpha
Helix 3	3	A	42	51	Right-handed alpha
Helix 4	4	A	68	73	Right-handed 310
Helix 5	5	A	81	93	Right-handed alpha
Helix 6	6	A	99	113	Right-handed alpha
Helix 7	7	A	137	149	Right-handed alpha
Helix 8	8	B	14	17	Right-handed 310
Helix 9	9	B	18	37	Right-handed alpha
Helix 10	10	B	42	51	Right-handed alpha
Helix 11	11	B	68	73	Right-handed 310
Helix 12	12	B	81	93	Right-handed alpha
Helix 13	13	B	99	113	Right-handed alpha
Helix 14	14	B	137	149	Right-handed alpha
Helix 15	15	C	14	17	Right-handed 310
Helix 16	16	C	18	37	Right-handed alpha
Helix 17	17	C	42	51	Right-handed alpha
Helix 18	18	C	68	73	Right-handed 310
Helix 19	19	C	81	93	Right-handed alpha
Helix 20	20	C	99	113	Right-handed alpha
Helix 21	21	C	137	149	Right-handed alpha
Helix 22	22	D	14	17	Right-handed 310
Helix 23	23	D	18	37	Right-handed alpha
Helix 24	24	D	42	51	Right-handed alpha
Helix 25	25	D	68	73	Right-handed 310
Helix 26	26	D	81	93	Right-handed alpha
Helix 27	27	D	99	113	Right-handed alpha
Helix 28	28	D	137	149	Right-handed alpha
Helix 29	29	E	14	17	Right-handed 310
Helix 30	30	E	18	37	Right-handed alpha
Helix 31	31	E	42	51	Right-handed alpha
Helix 32	32	E	68	73	Right-handed 310
Helix 33	33	E	81	93	Right-handed alpha
Helix 34	34	E	99	113	Right-handed alpha
Helix 35	35	E	137	149	Right-handed alpha
Helix 36	36	F	14	17	Right-handed 310
Helix 37	37	F	18	37	Right-handed alpha
Helix 38	38	F	42	51	Right-handed alpha
Helix 39	39	F	68	73	Right-handed 310
Helix 40	40	F	81	93	Right-handed alpha
Helix 41	41	F	99	113	Right-handed alpha
Helix 42	42	F	137	149	Right-handed alpha
Helix 43	43	G	14	17	Right-handed 310
Helix 44	44	G	18	37	Right-handed alpha
Helix 45	45	G	42	51	Right-handed alpha
Helix 46	46	G	68	73	Right-handed 310
Helix 47	47	G	81	93	Right-handed alpha
Helix 48	48	G	99	113	Right-handed alpha
Helix 49	49	G	137	149	Right-handed alpha
Helix 50	50	H	14	17	Right-handed 310
Helix 51	51	H	18	37	Right-handed alpha
Helix 52	52	H	42	51	Right-handed alpha
Helix 53	53	H	68	73	Right-handed 310
Helix 54	54	H	81	93	Right-handed alpha
Helix 55	55	H	99	113	Right-handed alpha
Helix 56	56	H	137	149	Right-handed alpha
Helix 57	57	I	14	17	Right-handed 310
Helix 58	58	I	18	37	Right-handed alpha
Helix 59	59	I	42	51	Right-handed alpha
Helix 60	60	I	68	73	Right-handed 310
Helix 61	61	I	81	93	Right-handed alpha
Helix 62	62	I	99	113	Right-handed alpha
Helix 63	63	I	137	149	Right-handed alpha
Helix 64	64	J	14	17	Right-handed 310
Helix 65	65	J	18	37	Right-handed alpha
Helix 66	66	J	42	51	Right-handed alpha
Helix 67	67	J	68	73	Right-handed 310
Helix 68	68	J	81	93	Right-handed alpha
Helix 69	69	J	99	113	Right-handed alpha
Helix 70	70	J	137	149	Right-handed alpha
Helix 71	71	K	14	17	Right-handed 310
Helix 72	72	K	18	37	Right-handed alpha
Helix 73	73	K	42	51	Right-handed alpha
Helix 74	74	K	68	73	Right-handed 310
Helix 75	75	K	81	93	Right-handed alpha
Helix 76	76	K	99	113	Right-handed alpha
Helix 77	77	K	137	149	Right-handed alpha
Helix 78	78	L	14	17	Right-handed 310
Helix 79	79	L	18	37	Right-handed alpha
Helix 80	80	L	42	51	Right-handed alpha
Helix 81	81	L	68	73	Right-handed 310
Helix 82	82	L	81	93	Right-handed alpha
Helix 83	83	L	99	113	Right-handed alpha
Helix 84	84	L	137	149	Right-handed alpha
Helix 85	85	M	14	17	Right-handed 310
Helix 86	86	M	18	37	Right-handed alpha
Helix 87	87	M	42	51	Right-handed alpha
Helix 88	88	M	68	73	Right-handed 310
Helix 89	89	M	81	93	Right-handed alpha
Helix 90	90	M	99	113	Right-handed alpha
Helix 91	91	M	137	149	Right-handed alpha
Helix 92	92	N	14	17	Right-handed 310
Helix 93	93	N	18	37	Right-handed alpha
Helix 94	94	N	42	51	Right-handed alpha
Helix 95	95	N	68	73	Right-handed 310
Helix 96	96	N	81	93	Right-handed alpha
Helix 97	97	N	99	113	Right-handed alpha
Helix 98	98	N	137	149	Right-handed alpha
Helix 99	99	O	14	17	Right-handed 310
Helix 100	100	O	18	37	Right-handed alpha
Helix 101	101	O	42	51	Right-handed alpha
Helix 102	102	O	68	73	Right-handed 310
Helix 103	103	O	81	93	Right-handed alpha
Helix 104	104	O	99	113	Right-handed alpha
Helix 105	105	O	137	149	Right-handed alpha
Helix 106	106	P	14	17	Right-handed 310
Helix 107	107	P	18	37	Right-handed alpha
Helix 108	108	P	42	51	Right-handed alpha
Helix 109	109	P	68	73	Right-handed 310
Helix 110	110	P	81	93	Right-handed alpha
Helix 111	111	P	99	113	Right-handed alpha
Helix 112	112	P	137	149	Right-handed alpha
Helix 113	113	Q	14	17	Right-handed 310
Helix 114	114	Q	18	37	Right-handed alpha
Helix 115	115	Q	42	51	Right-handed alpha
Helix 116	116	Q	68	73	Right-handed 310
Helix 117	117	Q	81	93	Right-handed alpha
Helix 118	118	Q	99	113	Right-handed alpha
Helix 119	119	Q	137	149	Right-handed alpha

There are 34 sheets in PDB entry 3KML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	79	80	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	63	65	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	79	80	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	63	65	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	79	80	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	63	65	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	79	80	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	63	65	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	79	80	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	63	65	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	130	132	anti-parallel
Strand 3	F	79	80	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	63	65	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	41	first strand
Strand 2	G	130	132	anti-parallel
Strand 3	G	79	80	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	63	65	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	41	first strand
Strand 2	H	130	132	anti-parallel
Strand 3	H	79	80	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	55	first strand
Strand 2	H	63	65	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	41	first strand
Strand 2	I	130	132	anti-parallel
Strand 3	I	79	80	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	55	first strand
Strand 2	I	63	65	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	41	first strand
Strand 2	J	130	132	anti-parallel
Strand 3	J	79	80	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	55	first strand
Strand 2	J	63	65	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	41	first strand
Strand 2	K	130	132	anti-parallel
Strand 3	K	79	80	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	55	first strand
Strand 2	K	63	65	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	41	first strand
Strand 2	L	130	132	anti-parallel
Strand 3	L	79	80	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	55	first strand
Strand 2	L	63	65	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	41	first strand
Strand 2	M	130	132	anti-parallel
Strand 3	M	79	80	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	55	first strand
Strand 2	M	63	65	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	41	first strand
Strand 2	N	130	132	anti-parallel
Strand 3	N	79	80	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	55	first strand
Strand 2	N	63	65	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	41	first strand
Strand 2	O	130	132	anti-parallel
Strand 3	O	79	80	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	53	55	first strand
Strand 2	O	63	65	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	40	41	first strand
Strand 2	P	130	132	anti-parallel
Strand 3	P	79	80	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	53	55	first strand
Strand 2	P	63	65	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	40	41	first strand
Strand 2	Q	130	132	anti-parallel
Strand 3	Q	79	80	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	53	55	first strand
Strand 2	Q	63	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KML

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KML