Analysis of interatomic Contacts of Structural Units in PDB entry:
3KMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KMP entry

There are 4 chains in PDB entry 3KMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 9SER 132
B
 THR 10SER 132
C
 A 1 A 15
D
 G 2 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3KMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
24 42Right-handed alpha
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
83 93Right-handed alpha
Helix 5
5
A
99 101Right-handed 310
Helix 6
6
A
112 116Right-handed 310
Helix 7
7
A
123 125Right-handed 310
Helix 8
8
B
11 20Right-handed alpha
Helix 9
9
B
24 42Right-handed alpha
Helix 10
10
B
46 57Right-handed alpha
Helix 11
11
B
83 93Right-handed alpha
Helix 12
12
B
99 101Right-handed 310
Helix 13
13
B
112 116Right-handed 310
Helix 14
14
B
123 125Right-handed 310
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There are 6 sheets in PDB entry 3KMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
119 121anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
127 129anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
119 121anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
80 82anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
127 129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il