Analysis of interatomic Contacts of Structural Units in PDB entry:
3KMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KMV entry

There are 8 chains in PDB entry 3KMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10SER 145
B
 THR 9GLU 146
C
 THR 9SER 145
D
 ILE 8SER 145
E
 PRO 7GLU 146
F
 THR 9SER 145
G
 THR 9GLU 146
H
 PRO 7SER 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3KMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
85 91Right-handed alpha
Helix 3
3
A
132 139Right-handed alpha
Helix 4
4
B
38 42Right-handed 310
Helix 5
5
B
85 92Right-handed alpha
Helix 6
6
B
132 139Right-handed alpha
Helix 7
7
C
38 42Right-handed 310
Helix 8
8
C
85 92Right-handed alpha
Helix 9
9
C
132 139Right-handed alpha
Helix 10
10
D
38 42Right-handed 310
Helix 11
11
D
85 91Right-handed alpha
Helix 12
12
D
132 139Right-handed alpha
Helix 13
13
E
38 42Right-handed 310
Helix 14
14
E
85 91Right-handed alpha
Helix 15
15
E
132 139Right-handed alpha
Helix 16
16
F
38 42Right-handed 310
Helix 17
17
F
85 91Right-handed alpha
Helix 18
18
F
132 139Right-handed alpha
Helix 19
19
G
38 42Right-handed 310
Helix 20
20
G
85 92Right-handed alpha
Helix 21
21
G
132 139Right-handed alpha
Helix 22
22
H
38 42Right-handed 310
Helix 23
23
H
85 91Right-handed alpha
Helix 24
24
H
132 139Right-handed alpha
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There are 33 sheets in PDB entry 3KMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
141 144anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
29 33anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
94 98anti-parallel
Strand 4
A
106 110anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
76 81anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
124 129anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
44 48anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
94 98anti-parallel
Strand 5
B
106 110anti-parallel
Strand 6
B
141 145anti-parallel
Strand 7
B
10 15anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
29 33anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 73first strand
Strand 2
B
76 81anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
124 129anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 15first strand
Strand 2
C
44 48anti-parallel
Strand 3
C
57 62anti-parallel
Strand 4
C
94 98anti-parallel
Strand 5
C
106 110anti-parallel
Strand 6
C
141 144anti-parallel
Strand 7
C
10 15anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 26first strand
Strand 2
C
29 34anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 73first strand
Strand 2
C
76 81anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 121first strand
Strand 2
C
124 129anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 15first strand
Strand 2
D
44 48anti-parallel
Strand 3
D
57 62anti-parallel
Strand 4
D
94 98anti-parallel
Strand 5
D
106 110anti-parallel
Strand 6
D
141 144anti-parallel
Strand 7
D
9 15anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 26first strand
Strand 2
D
29 33anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 73first strand
Strand 2
D
76 81anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 121first strand
Strand 2
D
124 129anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 15first strand
Strand 2
E
44 48anti-parallel
Strand 3
E
57 62anti-parallel
Strand 4
E
94 98anti-parallel
Strand 5
E
106 110anti-parallel
Strand 6
E
141 145anti-parallel
Strand 7
E
9 15anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 26first strand
Strand 2
E
29 33anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 73first strand
Strand 2
E
76 81anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 121first strand
Strand 2
E
124 129anti-parallel
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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 15first strand
Strand 2
F
44 48anti-parallel
Strand 3
F
57 62anti-parallel
Strand 4
F
94 98anti-parallel
Strand 5
F
106 110anti-parallel
Strand 6
F
141 144anti-parallel
Strand 7
F
10 15anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 26first strand
Strand 2
F
29 34anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
68 73first strand
Strand 2
F
76 81anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 121first strand
Strand 2
F
124 129anti-parallel
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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 15first strand
Strand 2
G
44 48anti-parallel
Strand 3
G
57 62anti-parallel
Strand 4
G
94 98anti-parallel
Strand 5
G
106 110anti-parallel
Strand 6
G
141 145anti-parallel
Strand 7
G
10 15anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
21 26first strand
Strand 2
G
29 34anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
68 73first strand
Strand 2
G
76 81anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
116 121first strand
Strand 2
G
124 129anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 15first strand
Strand 2
H
44 48anti-parallel
Strand 3
H
57 62anti-parallel
Strand 4
H
94 98anti-parallel
Strand 5
H
106 110anti-parallel
Strand 6
H
141 144anti-parallel
Strand 7
H
9 15anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 26first strand
Strand 2
H
29 33anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
68 73first strand
Strand 2
H
76 81anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 121first strand
Strand 2
H
124 129anti-parallel
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