Analysis of interatomic Contacts of Structural Units in PDB entry:
3KN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KN6 entry

There are 2 chains in PDB entry 3KN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 415GLY 729
B
 LYS 415GLY 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3KN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
417 422Right-handed alpha
Helix 2
2
A
461 475Right-handed alpha
Helix 3
3
A
505 513Right-handed alpha
Helix 4
4
A
517 538Right-handed alpha
Helix 5
5
A
546 548Right-handed 310
Helix 6
6
A
601 618Right-handed alpha
Helix 7
7
A
633 642Right-handed alpha
Helix 8
8
A
650 655Right-handed alpha
Helix 9
9
A
657 669Right-handed alpha
Helix 10
10
A
684 688Right-handed 310
Helix 11
11
A
699 729Right-handed alpha
Helix 12
12
B
417 422Right-handed alpha
Helix 13
13
B
461 475Right-handed alpha
Helix 14
14
B
506 513Right-handed alpha
Helix 15
15
B
517 538Right-handed alpha
Helix 16
16
B
546 548Right-handed 310
Helix 17
17
B
601 618Right-handed alpha
Helix 18
18
B
633 644Right-handed alpha
Helix 19
19
B
650 655Right-handed alpha
Helix 20
20
B
657 669Right-handed alpha
Helix 21
21
B
677 682Right-handed alpha
Helix 22
22
B
683 688Right-handed 310
Helix 23
23
B
699 728Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3KN6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
433 435anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
451 458anti-parallel
Strand 4
A
493 498anti-parallel
Strand 5
A
484 489anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
570 571anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
560 563anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
438 445anti-parallel
Strand 3
B
433 435anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
438 445anti-parallel
Strand 3
B
451 458anti-parallel
Strand 4
B
493 498anti-parallel
Strand 5
B
484 489anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 505first strand
Strand 2
B
550 552anti-parallel
Strand 3
B
561 563anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 541first strand
Strand 2
B
570 571anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il