Analysis of interatomic Contacts of Structural Units in PDB entry:
3KO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KO6 entry

There are 2 chains in PDB entry 3KO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4PHE 179
B
 SER 4PHE 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3KO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed 310
Helix 2
2
A
20 37Right-handed alpha
Helix 3
3
A
41 60Right-handed alpha
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
159 177Right-handed alpha
Helix 7
7
B
8 14Right-handed 310
Helix 8
8
B
20 36Right-handed alpha
Helix 9
9
B
41 60Right-handed alpha
Helix 10
10
B
98 108Right-handed alpha
Helix 11
11
B
115 119Right-handed 310
Helix 12
12
B
159 177Right-handed alpha
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There are 2 sheets in PDB entry 3KO6. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
79 87anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
144 152anti-parallel
Strand 5
A
131 138anti-parallel
Strand 6
A
111 113anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
79 87anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
144 152anti-parallel
Strand 5
B
131 138anti-parallel
Strand 6
B
111 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il