Analysis of interatomic Contacts of Structural Units in PDB entry:
3KO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KO8 entry

There is 1 chain in PDB entry 3KO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3KO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
81 104Right-handed alpha
Helix 5
5
A
115 118Right-handed 310
Helix 6
6
A
135 156Right-handed alpha
Helix 7
7
A
175 187Right-handed alpha
Helix 8
8
A
206 223Right-handed alpha
Helix 9
9
A
240 252Right-handed alpha
Helix 10
10
A
280 288Right-handed alpha
Helix 11
11
A
294 311Right-handed alpha
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There are 4 sheets in PDB entry 3KO8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
65 68parallel
Strand 5
A
107 113parallel
Strand 6
A
158 164parallel
Strand 7
A
227 232parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
203 205parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
256 259parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
200 201anti-parallel
Strand 3
A
275 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il