Analysis of interatomic Contacts of Structural Units in PDB entry:
3KOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KOD entry

There are 6 chains in PDB entry 3KOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 160
B
 MET 1ASN 161
C
 MET 1ASP 159
D
 MET 1ASP 159
E
 MET 1ASP 159
F
 MET 1ILE 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3KOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 62Right-handed alpha
Helix 2
2
A
88 93Right-handed 310
Helix 3
3
A
108 127Right-handed alpha
Helix 4
4
B
48 62Right-handed alpha
Helix 5
5
B
89 92Right-handed 310
Helix 6
6
B
108 126Right-handed alpha
Helix 7
7
B
128 130Right-handed 310
Helix 8
8
B
158 160Right-handed 310
Helix 9
9
C
48 62Right-handed alpha
Helix 10
10
C
76 80Right-handed alpha
Helix 11
11
C
89 93Right-handed 310
Helix 12
12
C
108 125Right-handed alpha
Helix 13
13
C
126 127Right-handed 310
Helix 14
14
C
128 130Right-handed 310
Helix 15
15
D
48 62Right-handed alpha
Helix 16
16
D
77 80Right-handed 310
Helix 17
17
D
88 92Right-handed 310
Helix 18
18
D
108 127Right-handed alpha
Helix 19
19
E
48 62Right-handed alpha
Helix 20
20
E
77 80Right-handed 310
Helix 21
21
E
89 93Right-handed 310
Helix 22
22
E
110 127Right-handed alpha
Helix 23
23
E
128 132Right-handed 310
Helix 24
24
F
48 62Right-handed alpha
Helix 25
25
F
89 93Right-handed 310
Helix 26
26
F
110 127Right-handed alpha
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There are no sheets in PDB entry 3KOD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il