Analysis of interatomic Contacts of Structural Units in PDB entry:
3KPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KPB entry

There are 4 chains in PDB entry 3KPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 388GLY 506
C
 THR 388GLY 506
B
 THR 388GLY 506
D
 THR 388GLY 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3KPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
389 394Right-handed alpha
Helix 2
2
A
406 418Right-handed alpha
Helix 3
3
A
436 446Right-handed alpha
Helix 4
4
A
450 454Right-handed 310
Helix 5
5
A
467 479Right-handed alpha
Helix 6
6
A
498 506Right-handed alpha
Helix 7
7
C
389 394Right-handed alpha
Helix 8
8
C
406 418Right-handed alpha
Helix 9
9
C
436 446Right-handed alpha
Helix 10
10
C
450 455Right-handed alpha
Helix 11
11
C
467 479Right-handed alpha
Helix 12
12
C
498 506Right-handed alpha
Helix 13
13
B
389 393Right-handed 310
Helix 14
14
B
406 418Right-handed alpha
Helix 15
15
B
436 446Right-handed alpha
Helix 16
16
B
450 454Right-handed 310
Helix 17
17
B
467 479Right-handed alpha
Helix 18
18
B
498 506Right-handed alpha
Helix 19
19
D
389 394Right-handed 310
Helix 20
20
D
406 418Right-handed alpha
Helix 21
21
D
436 446Right-handed alpha
Helix 22
22
D
450 454Right-handed 310
Helix 23
23
D
468 479Right-handed alpha
Helix 24
24
D
498 506Right-handed alpha
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There are 8 sheets in PDB entry 3KPB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
422 425parallel
Strand 3
A
431 435anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
482 486parallel
Strand 3
A
492 497anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
422 425first strand
Strand 2
C
431 435anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 463first strand
Strand 2
C
482 486parallel
Strand 3
C
492 497anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
422 425parallel
Strand 3
B
431 435anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 463first strand
Strand 2
B
482 486parallel
Strand 3
B
492 497anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
422 425first strand
Strand 2
D
431 435anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
462 463first strand
Strand 2
D
482 486parallel
Strand 3
D
492 497anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il