Analysis of interatomic Contacts of Structural Units in PDB entry:
3KQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KQL entry

There are 4 chains in PDB entry 3KQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 189ALA 625
B
 SER 189ALA 625
E
 T 16 T 21
F
 T 16 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 3KQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
212 221Right-handed alpha
Helix 2
2
A
231 247Right-handed alpha
Helix 3
3
A
270 276Right-handed alpha
Helix 4
4
A
296 310Right-handed alpha
Helix 5
5
A
355 360Right-handed 310
Helix 6
6
A
370 383Right-handed alpha
Helix 7
7
A
396 400Right-handed 310
Helix 8
8
A
412 415Right-handed 310
Helix 9
9
A
454 463Right-handed alpha
Helix 10
10
A
488 501Right-handed alpha
Helix 11
11
A
505 518Right-handed alpha
Helix 12
12
A
528 538Right-handed alpha
Helix 13
13
A
543 553Right-handed alpha
Helix 14
14
A
557 570Right-handed alpha
Helix 15
15
A
579 581Right-handed 310
Helix 16
16
A
582 587Right-handed alpha
Helix 17
17
A
588 592Right-handed 310
Helix 18
18
A
613 625Right-handed alpha
Helix 19
19
B
212 221Right-handed alpha
Helix 20
20
B
231 247Right-handed alpha
Helix 21
21
B
270 276Right-handed alpha
Helix 22
22
B
277 282Right-handed 310
Helix 23
23
B
296 310Right-handed alpha
Helix 24
24
B
355 359Right-handed 310
Helix 25
25
B
370 383Right-handed alpha
Helix 26
26
B
396 400Right-handed 310
Helix 27
27
B
412 415Right-handed 310
Helix 28
28
B
454 463Right-handed alpha
Helix 29
29
B
488 501Right-handed alpha
Helix 30
30
B
505 518Right-handed alpha
Helix 31
31
B
528 538Right-handed alpha
Helix 32
32
B
543 554Right-handed alpha
Helix 33
33
B
557 570Right-handed alpha
Helix 34
34
B
579 583Right-handed 310
Helix 35
35
B
585 592Right-handed 310
Helix 36
36
B
613 625Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3KQL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
317 322parallel
Strand 3
A
286 289parallel
Strand 4
A
225 229parallel
Strand 5
A
265 269parallel
Strand 6
A
251 253parallel
Strand 7
A
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
471 475parallel
Strand 3
A
424 427parallel
Strand 4
A
363 367parallel
Strand 5
A
406 410parallel
Strand 6
A
388 391parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 437first strand
Strand 2
A
445 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
609 610parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
317 322parallel
Strand 3
B
286 289parallel
Strand 4
B
225 229parallel
Strand 5
B
265 269parallel
Strand 6
B
251 253parallel
Strand 7
B
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 340first strand
Strand 2
B
471 475parallel
Strand 3
B
424 427parallel
Strand 4
B
363 367parallel
Strand 5
B
406 410parallel
Strand 6
B
388 391parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 437first strand
Strand 2
B
445 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 597first strand
Strand 2
B
609 610parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il